Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq31223 125 5e-24 seq44559 114 8e-21 seq207359 105 4e-18 seq53127 93.3 3e-14 seq45806 91.5 1e-13 seq1324 82.4 5e-11 >seq31223 Length=3647 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || ||||| |||||||| || || || || || Sbjct 503 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 562 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||||||| ||||| || ||||||||||| || |||||| | || Sbjct 563 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 622 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || |||| || | || ||| | ||| || Sbjct 623 ATGCCTTCCTTGTCTTGAATTTT-GGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 681 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | ||||| |||||||||||||| Sbjct 682 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 729 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || || || | ||| |||||||| ||||| || || || Sbjct 46 ACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTATAGTCAGA 105 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || || ||||| || || |||||||| | ||| || |||||| | || Sbjct 106 CAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCTGGAGG 165 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| |||| |||| || | ||||| | ||| | Sbjct 166 AATGCCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTTTCAATTGTGTCAGAAGCTTCAA 224 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || | ||||| ||||| || |||||| Sbjct 225 CTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAAATTTGCATA 274 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || || |||||||| || || ||||| || || ||||| || | ||| || | Sbjct 287 CGCAATACTAAATGTAGGGTCGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 346 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||||||||| |||||||| | | ||| |||||| | || | ||| |||||| Sbjct 347 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 406 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || || |||| ||| || | |||||| | || || || | ||||| Sbjct 407 TCTTGGATCTTTGCCTTCA-CATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGAT 465 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||||| | || || |||||||||||||| Sbjct 466 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 501 >seq44559 Length=2984 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| |||||||| ||||| || | |||| |||||| || || ||||| || || Sbjct 1119 ACCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGA 1060 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||| || || || || ||||| | ||| || |||||| | || Sbjct 1059 GAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGG 1000 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||| |||||||| || || ||| ||||| ||| ||||| | ||| | Sbjct 999 AATACCCTCTTTGTCTTGGATCTTGGCTTT-AACATTTTCAATAGTGTCTGAGGGTTCAA 941 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| | || |||||||||||||||||| Sbjct 940 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCATA 891 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | || | ||| || || ||| ||||| |||||||| || || Sbjct 207 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 148 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||||||| || || ||||| || | |||||||||||| | || Sbjct 147 CAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 88 Query 33642 CACACCTTCTTTGTC 33656 | || |||||||| Sbjct 87 GATGCCCTCTTTGTC 73 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || ||||| | ||| |||||||| ||||| || || || Sbjct 1346 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAT 1287 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || || ||||| || ||||| || | |||||| || ||| | || Sbjct 1286 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 1227 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || ||||| || | |||||| || ||||| Sbjct 1226 ATGCCCTCCTTGTCTTGGATCTTAGCCTT-AACATTTTCGATAGTGTCGGATGGCTCCAC 1168 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 1167 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCATA 1119 >seq207359 Length=487 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || || || | ||| |||||||| |||||||| || || Sbjct 442 ACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGA 383 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || || ||||| || || |||||||| | ||| || ||||| | || Sbjct 382 CAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGG 323 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| |||| |||| || | ||||| | ||| | Sbjct 322 AATGCCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTTTCAATTGTGTCAGAAGCTTCAA 264 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || | ||||| |||||||| |||||| Sbjct 263 CTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCATA 214 >seq53127 Length=7988 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | |||||| || | ||| || ||||| || || ||||| || Sbjct 6280 CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGAC 6221 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| ||| | || |||| |||||||| |||||||| | | ||| || || | || Sbjct 6220 AGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 6161 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| || | ||||| || | || || | |||||| Sbjct 6160 ATGCCTTCTTTGTCTTGAATTTT-TGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 6102 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | || |||||||| || ||||| Sbjct 6101 TTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 6054 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| || | |||| || | ||| || || || || ||||| || || Sbjct 6508 CCACCTCTCAACCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 6449 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || || | || ||||| |||||||| | | ||||||||| | || Sbjct 6448 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 6389 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| ||||| || |||||| || || ||||| || | || || | |||||| Sbjct 6388 ATACCCTCTTTATCCTGAATTTT-TGCTTTAACATTTTCAATTGTATCAGAAGCTTCCAC 6330 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || ||||| || ||||| Sbjct 6329 TTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTAACAAAAATTTGCAT 6282 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| |||| || | || | ||| ||||| || ||||||||||| || Sbjct 6052 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 5993 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || || | || ||||| |||||||| | | ||||||||| | || Sbjct 5992 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 5933 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || |||||| || || ||||| || | || || | || || Sbjct 5932 ATTCCCTCTTTATCCTGAATTTT-TGCTTTAACATTTTCAATTGTATCAGAAGGCTCAAC 5874 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || ||||| || || ||||| Sbjct 5873 TTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 5826 >seq45806 Length=6479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 70291 TTTTTAACACCCGAAACAATGGCCAGATGTGGATTTTATTATTTGAAACGAGGTGATGAA 70350 |||||| ||||||| || | || || ||| || |||||| || || || |||||| Sbjct 4805 TTTTTATTACCCGAATCACTCGCGAGGAATGGCTTCTATTATCTGGGCCGCGGCGATGAA 4864 Query 70351 GTTAGATGTGCCTATTGTAAAGTGGAAATAATGCAATGGAAAGAGGGTGATGATCCATCC 70410 || | || || | ||||||||| ||||| ||| ||||| | ||| || ||||| || Sbjct 4865 GTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTGCGGGCGACGATCCCGCC 4924 Query 70411 GCCGACCACAAGCGATGGGCGCCTCAATGC 70440 |||||| |||| ||||||||||| ||| Sbjct 4925 AAGGACCACCAGCGCTGGGCGCCTCAGTGC 4954 >seq1324 Length=7229 Score = 82.4 bits (90), Expect = 5e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| | || | ||| || ||||| ||| || ||||| |||||||| |||| Sbjct 763 CACCACCTCGGAGTCGGAGCACTAAGTGTAGTGTGGATTCCTTTTGAATGTTGTAGTCGG 822 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAA 33623 |||| || || | || ||||||||||| |||||||| ||||| Sbjct 823 AGAGGGTTCGGCCATCTTCCAATTGTTTACCGGCAAAGATCAA 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327752099306880