Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq24004 614 7e-171 seq32346 98.7 1e-15 >seq24004 Length=11461 Score = 614 bits (680), Expect = 7e-171 Identities = 1124/1629 (69%), Gaps = 23/1629 (1%) Strand=Plus/Minus Query 68354 TTATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGAT 68413 |||||||| | || || | ||||||||||| | | ||| |||||||| |||| | Sbjct 10016 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 9957 Query 68414 AGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGG 68473 ||||||| || ||||| | || | |||| ||| |||||| || || ||||| Sbjct 9956 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 9897 Query 68474 AATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTC 68533 ||| | || | || | ||| || || | ||||||||||| || || |||||||||| Sbjct 9896 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 9837 Query 68534 TATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAAT 68591 |||| || ||||| | ||| | || | | ||| ||||| | || | || |||| Sbjct 9836 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 9777 Query 68592 CTGTTTGATATCATCTGGAAGGCT---CGTATTTTGAATGGATCCACCATCGGATATAAT 68648 || || || || | |||| | | | ||| || |||||| | | ||||||| Sbjct 9776 CTCTT--ATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAAT 9719 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | ||| || || || |||| |||||| | | || ||| | | || ||||| | Sbjct 9718 AAGATTTTTCATATCGTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 9659 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 || |||| ||||||| |||||||| ||||| | ||||||||| ||| | || Sbjct 9658 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 9599 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | ||||||| | || || |||||||| ||||| || ||||| |||||||| || | Sbjct 9598 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 9539 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | | ||||||| || || || ||||| || ||| ||||| Sbjct 9538 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 9479 Query 68889 AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA 68948 ||| || | || | ||| | ||| || || || || || | ||||| | Sbjct 9478 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGAC 9420 Query 68949 TCCATT-ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 ||| || |||||| || | ||||| | |||||||| ||||||||| || ||||||| Sbjct 9419 TCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATG 9360 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 |||| |||||||||||||| || || | | ||||||| | ||||| ||| ||| Sbjct 9359 CACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGT 9300 Query 69068 ATGGATAATGT-AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 | |||| | | | | | ||| |||||||||| |||||||| |||||||| |||||| Sbjct 9299 A-AGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 9241 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 ||||||||| |||||||| ||| ||||| || | ||||||| |||||| ||| |||| | Sbjct 9240 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 9181 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 || || | |||| | ||| | || | || |||| ||| ||||| ||||| Sbjct 9180 TTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG 9121 Query 69247 CCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA--T 69304 || | ||||||||| || ||||||| || || || || || ||||| || ||| | Sbjct 9120 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCT 9061 Query 69305 TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 | | || ||||| | | ||| || || ||||| |||||||| ||||| || |||| Sbjct 9060 TCTGAAGTG--TATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 9003 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 ||| |||||||||||| ||||||| || ||||| || | || | || |||||||| | Sbjct 9002 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 8943 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTAC-GGTCTTGTAA 69483 | | || | ||| ||||| || ||||| | || || | | | | || || || ||| Sbjct 8942 CCACTTGGGCTTCTATAATTGACTTCCATA--ACTCTTG-AGCTCTGACTTGTTTTATAA 8886 Query 69484 --CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACA-TCA 69540 || || |||| |||||||| | |||||| || ||||| ||| || || || ||| Sbjct 8885 ATCGTTTTTCTTCTTCATATTTGGCATATAGTTCGTCAAATTCCTCT-CCAAAGCAGTCA 8827 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 | | |||||||| |||| |||||||| | ||| || ||||| | | |||| | Sbjct 8826 GCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTT 8767 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 |||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||||||| Sbjct 8766 TTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCC 8707 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || ||||| || || || | ||| | || || | ||||| | |||||| || |||| | Sbjct 8706 TTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAA 8647 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || || ||||| ||||| || ||||||| ||||||||||| || Sbjct 8646 TAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTG 8587 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| ||||||| ||| || | | |||||| || ||||| || |||| || ||| Sbjct 8586 TTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAA 8527 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || || | || | || || |||||| || || || |||||| ||| Sbjct 8526 GAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATT 8467 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| |||| || || ||| | ||||| || |||||||| ||| |||| | | Sbjct 8466 AATGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCTTTCATAGCTATA 8407 Query 69961 AGAAAACAG 69969 || |||||| Sbjct 8406 AGGAAACAG 8398 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| ||||| ||||||| |||||| |||||| |||||| || ||||||||||||||| Sbjct 7900 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 7841 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 ||| ||||| || |||| ||| |||| | || ||| ||||| | ||| Sbjct 7840 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 7791 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 70345 ttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || || || || || |||||||| ||||| ||||||||||| || | ||| ||||| || Sbjct 7135 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 7076 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | ||| || ||||||||| ||||| ||||||| |||| | || |||| Sbjct 7075 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 7016 Query 70465 GTAACTCCGTTATATA 70480 || || || ||||| Sbjct 7015 GTTACACCAGAATATA 7000 >seq32346 Length=5591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||||||||||| || ||||||||||| || || || ||||| ||||| | | Sbjct 4158 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 4217 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 |||||||| ||||||| ||||| || |||||||| | | ||||||| Sbjct 4218 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 4266 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | ||| ||| || || | ||| ||||| ||||| || |||| Sbjct 2979 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 3038 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||||||||| | |||||| || || || || || || || ||||||||||| | Sbjct 3039 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 3098 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 ||| | | ||||| | | | | || | || ||||||| ||||| || | Sbjct 3099 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 3158 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||| ||||| || | ||||| || ||||| || Sbjct 3159 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAA 3198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684868560654960