Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq145826 138 1e-27 seq52287 109 6e-19 >seq145826 Length=1556 Score = 138 bits (152), Expect = 1e-27 Identities = 114/139 (82%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||| || || || | ||| ||||||||||| || ||| Sbjct 1000 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 1059 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||||||||||||||||| ||||| || ||||||| ||||||||||||||| Sbjct 1060 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 1119 Query 159064 TCCATGTTCCCGAGCTCGA 159082 |||| ||| |||||||||| Sbjct 1120 TCCAGGTTGCCGAGCTCGA 1138 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||||| ||| |||||| | | |||||| || || || |||| Sbjct 1000 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 1059 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||||| | |||||||| ||||| ||||||||||||||| Sbjct 1060 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 1119 Query 124614 TCCAGGTTTCCGAGCTCGA 124632 |||||||| |||||||||| Sbjct 1120 TCCAGGTTGCCGAGCTCGA 1138 >seq52287 Length=7501 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 117287 GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCA 117346 ||| |||| | | | | |||||||||||||| | ||| |||||||| ||||| |||| Sbjct 359 GTCAACGGGGACATGAGTGTGAAAATGTAACGGGGGCTCGCAGCATCTTTGCCCCCAGAT 300 Query 117347 AGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAG 117406 ||||| ||||| || || |||| || ||||| ||||| | |||||| | |||||| || Sbjct 299 AGACGGGTACCAAACTGACCACGGGGTTCCAATAGGTTAATGTTGTTTGACCCCACATAG 240 Query 117407 TTTTGAGCCAAGTTGACAATCGT 117429 |||||||||| || || || || Sbjct 239 TTTTGAGCCAGATTCACTATTGT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545590672717200