Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq31223 122 5e-23 seq53127 120 2e-22 seq88586 104 1e-17 seq45806 100 2e-16 seq207359 93.3 3e-14 seq44559 93.3 3e-14 >seq31223 Length=3647 Score = 122 bits (134), Expect = 5e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || |||||||| ||||| || ||| Sbjct 503 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 562 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 563 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 622 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | ||| || || || || Sbjct 623 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 681 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| || || |||||||| || | ||||||||||| |||||||| ||||| Sbjct 682 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 735 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| || Sbjct 275 CCGCCACGAAGCCGCAATACTAAATGTAGGGTCGATTCCTTTTGAATATTATAATCAGAT 334 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| |||||||| || ||||| || | | |||||| || || || Sbjct 335 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGA 394 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| |||||| ||||||| || | | || ||||| ||| || Sbjct 395 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACC 454 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || || ||||| |||||||| Sbjct 455 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 501 >seq53127 Length=7988 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| |||||||| || ||||| | ||| |||||| || || ||||| ||||| Sbjct 7192 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 7133 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| ||||| || ||||| || || | | |||||||| || || Sbjct 7132 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGGTCTGGAGGA 7073 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | || ||||||||| |||||| | ||||| | ||||| || ||| |||| Sbjct 7072 ATGCCTTCCTTGTCTTGAATCTTT-GCCTTAACATTTTCTATTGTATCAGAAGCT-TCCA 7015 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || || |||||||||||||| ||||| Sbjct 7014 CTTCCAAAGTGATAGTTTTCCCAGTCAATGTTTTCACAAAAATTTGCAT 6966 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| |||| |||||| || | ||| ||||||||||| ||||||||||| Sbjct 6280 CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGAC 6221 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| || ||||| || | | ||||||||| || || Sbjct 6220 AGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 6161 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||| | ||||| || ||| |||| Sbjct 6160 ATGCCTTCTTTGTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCA 6103 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | || || ||||| || ||||| Sbjct 6102 CTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 6054 >seq88586 Length=4530 Score = 104 bits (114), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 34472 AATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTAT 34531 ||| || || || | ||| || | ||| | ||| | ||| |||||||||||||| | Sbjct 2171 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 2230 Query 34532 AATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGT 34591 | || || | ||| || | ||||| ||||||||||| ||||| || ||||| || |||| Sbjct 2231 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 2290 Query 34592 CCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCG 34650 | || || | || ||||| ||| ||| ||| | |||||| | || || || | Sbjct 2291 CTGGTGGAATACCTTCCTTATCTTGGAT-TTTAGCTTTAACATTTTCTATAGTATCAGAG 2349 Query 34651 CTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 2350 GCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 2405 >seq45806 Length=6479 Score = 100 bits (110), Expect = 2e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 46826 GGATGGCCCGTCAC--TTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 |||||||||||||| ||||||| ||||||| | || | || || || ||||||| Sbjct 4790 GGATGGCCCGTCACATTTTTATT--ACCCGAATCACTCGCGAGGAATGGCTTCTATTATC 4847 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | || |||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 4848 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 4907 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 ||| || ||||| ||| | ||||| | || ||||| |||||||| || ||| Sbjct 4908 CGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTGCCCTTTC 4960 >seq207359 Length=487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| || Sbjct 213 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 154 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| |||||||| || || || || | | |||||| || || || Sbjct 153 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAAATCAGCCTCTGTTGATCTGGGGGA 94 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||| |||||| ||||||| Sbjct 93 ATACCCTCTTTGTCTTGGATCTTT 70 >seq44559 Length=2984 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| | ||| || ||||| |||||||| || || Sbjct 1346 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAT 1287 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||||| ||||| || | |||||||||||| || || Sbjct 1286 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 1227 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | ||||| | || ||||| |||||| Sbjct 1226 ATGCCCTCCTTGTCTTGGATC-TTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCAC 1168 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || ||||| |||||||| Sbjct 1167 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 1120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || || || || ||| || ||||| || ||||| || | || || Sbjct 653 AGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGA 594 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || | |||||||||||| || || | |||||| Sbjct 593 CCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCC 534 Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCAC 34664 || | |||| || ||| | ||| || | |||||||| | | ||| ||||||| Sbjct 533 TTATCCTGT-AT-TTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCT--ACTTCCAG 478 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || || || ||||| ||||| || ||||| Sbjct 477 GGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313818168060062