Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq31223 102 6e-17 seq53127 100 2e-16 seq207359 89.7 4e-13 seq88586 82.4 5e-11 >seq31223 Length=3647 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| ||||| || ||| ||||| | || || ||| Sbjct 732 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 673 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || || | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 672 TCCGATACTATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAG 615 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || ||||| || ||||| |||||||| |||| ||||| | || || | Sbjct 614 ATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACT 555 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || |||||||| ||| | || ||||| |||||| | ||||| || Sbjct 554 ATAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 503 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| ||| ||||| | || || ||| | Sbjct 273 ATGCAAATTTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 214 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||||||||| |||| || | Sbjct 213 GACACAATTGAAAAT--GTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATC 156 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || || ||||| || || | || | |||| || || | Sbjct 155 AACAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTATA 96 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||||||||| |||||||| || || | ||||| Sbjct 95 ACATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTT 56 >seq53127 Length=7988 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| | ||||||||| ||| || | || || ||| | Sbjct 6966 ATGCAAATTTTTGTGAAAACATTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 7025 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||| || ||||| ||||| |||| || | Sbjct 7026 GATACAATAGAAAAT--GTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACC 7083 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | ||||| |||||||| ||| |||| || | ||||| ||||| || || | Sbjct 7084 AACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCAGACTATA 7143 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | ||||| || ||| ||||||||||| ||||||||| Sbjct 7144 ATATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGT 7181 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || || ||||| ||| ||| ||| | || || ||| | Sbjct 6053 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6112 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || |||||| ||||||||||| |||| || Sbjct 6113 TGATACAATAGAAAAT--GTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGAC 6170 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | |||||||| |||||||| |||| || | ||| | |||| ||||| Sbjct 6171 CAACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTAT 6230 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || || ||||| || |||||||| ||||| |||| Sbjct 6231 AATATTCAAAAGGAATCTACTTTGCACTTGGTGCTGCG 6268 >seq207359 Length=487 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| ||||| | || || ||| | Sbjct 215 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 274 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||||||||| |||| ||| | Sbjct 275 GACACAATTGAAAAT--GTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATC 332 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || || ||||| || || | || | |||| || |||| Sbjct 333 AACAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACA 392 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||||||||| |||||||| || || | ||||| Sbjct 393 ACATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTT 432 >seq88586 Length=4530 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || || ||||| || ||| ||||| | || || || | | Sbjct 2406 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 2347 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | || || || ||| ||||| || || |||||| |||| || || Sbjct 2346 TGATACTATAGAAAATGTTAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 2287 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| || |||||| | || || | ||| | ||||| || ||||| Sbjct 2286 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 2227 Query 27969 CATCCAAAAAGAGAGCACTTTGCAT 27993 ||| ||||| || ||| |||||| Sbjct 2226 CATTCAAAAGGAATCCACATTGCAT 2202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354831850736178