Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq135171 114 1e-20 seq53127 102 7e-17 seq119467 89.7 4e-13 seq71030 89.7 4e-13 seq31223 86.0 5e-12 >seq135171 Length=709 Score = 114 bits (126), Expect = 1e-20 Identities = 230/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 14715 AATTTGATAGCTACAACGATTACGTGGTGGCGGCGACATATTTTGACGGAAAGAAGGTGA 14774 ||||||| | ||||| |||||| | |||| | |||||||| | |||| | | Sbjct 524 AATTTGACAAATACAATGATTACATTCTGGCTTTAAATTATTTTGATGCAAAGGCTATTA 465 Query 14775 ACTACAACAGCGGTTTGTTTTACTATGTTCTGTGGAA-AT-TGTGCAGCGCCAAAAAGTG 14832 | ||||||| ||||||||||| ||||| |||||||| || |||| | || ||| | || Sbjct 464 AATACAACAAGGGTTTGTTTTATTATGTACTGTGGAATATATGTG-ATCG-TAAAGAATG 407 Query 14833 GATGAACCAAAATGTGCTTGACCAATT--TTGGAAATACGTTAA-ACTTCGCTTACAAAA 14889 |||| ||| |||||| |||| |||| | | ||| ||||| | | |||| || Sbjct 406 GATGGACCGAAATGTTGTTGAAAAATTCAAAGAATATATGTTAAGGCGT--ATTACCGAA 349 Query 14890 CACTACATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACT 14949 || | |||| | | ||||| | || |||||| |||| || || |||| ||||| Sbjct 348 -ACAAAATGCTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACT 290 Query 14950 ACTAACAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATT 15009 || |||| || ||||| ||||| || | || || | ||||||||| |||| | Sbjct 289 ACCTGCAGCTCTCTGGTATTGTGTAGAAATTTCATCATATATATTTAAAGACGATGACGC 230 Query 15010 ACATTACACCAATGAAAGACTGCGACTTTAT 15040 ||||||| |||| ||||| ||| | |||| Sbjct 229 ACATTACTCCAAAGAAAGGTTGCAAAATTAT 199 >seq53127 Length=7988 Score = 102 bits (112), Expect = 7e-17 Identities = 173/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || || || | ||| | |||||| || | || || || Sbjct 6297 TAACAAAAATTTG--CATTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTT 6240 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||||||||| | ||||| ||| | || || |||||||| || ||||| ||||| Sbjct 6239 TTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAG 6180 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCA 39217 | ||| ||||| | || | || ||||||| | ||| ||| || || | | | | Sbjct 6179 CCTCTGTTGGTCAGGAGGAATGCCTTCTTTGT-CTTGAATTTTTGCCTTAACATTTTCTA 6121 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 ||||| | ||||| |||| |||||| |||| || ||||| || || ||||| | Sbjct 6120 TTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATA 6061 Query 39278 TTTGCAT 39284 ||||||| Sbjct 6060 TTTGCAT 6054 >seq119467 Length=709 Score = 89.7 bits (98), Expect = 4e-13 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 14715 AATTTGATAGCTACAACGATTACGTGGTGGCGGCGACATATTTTGACGGAAAGAAGGTGA 14774 ||||||| | ||||| |||||| | |||| | |||||||| |||| | | Sbjct 186 AATTTGACAAATACAATGATTACATTCTGGCTTTAAATTATTTTGATTCAAAGGCTATTA 245 Query 14775 ACTACAACAGCGGTTTGTTTTACTATGTTCTGTGGAA-AT-TGTGCAGCGCCAAAAAGTG 14832 ||||||| ||||||||||| ||||| |||||||| || |||| | || || || || Sbjct 246 GATACAACAAGGGTTTGTTTTATTATGTACTGTGGAATATATGTG-ATCGTAAAGAA-TG 303 Query 14833 GATGAACCAAAATGTGCTTGACCAATTTTG-GAA-ATACGTTAAACTTCGCTTACAAAAC 14890 ||| ||| |||||| || |||| ||| ||| ||||| | | | |||| Sbjct 304 GATTGACCGAAATGTTGCAGAAAAATTCAAAGAATATATGTTAAGGCGTGTTGCCGAAAC 363 Query 14891 ACTACATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACTA 14950 | | |||| | | ||| | | || |||||| |||| || || |||| ||||| Sbjct 364 A--AAATGCTATATTGGTTTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTG 421 Query 14951 CTAACAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATTA 15010 | |||| || ||||| ||||| || | || || ||||||||||| |||| | Sbjct 422 CCTGCAGCTCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATGACGCG 481 Query 15011 CATTACACCAATGAAAGACTGCGACTTTAT 15040 |||||| |||| |||||| ||| | |||| Sbjct 482 CATTACTCCAAAGAAAGATTGCAAAATTAT 511 >seq71030 Length=3081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 14715 AATTTGATAGCTACAACGATTACGTGGTGGCGGCGACATATTTTGACGGAAAGAAGGTGA 14774 ||||||| | ||||| |||||| | | || | |||||||| |||| | | Sbjct 746 AATTTGACAAATACAATGATTACATTCTAGCTTTAAATTATTTTGATTCAAAGGCTATTA 687 Query 14775 ACTACAACAGCGGTTTGTTTTACTATGTTCTGTGGAA-AT-TGTGCAGCGCCAAAAAGTG 14832 | ||||| | ||||||||||| ||||| |||||||| || |||| | || || || || Sbjct 686 AATACAATAAGGGTTTGTTTTATTATGTACTGTGGAATATATGTG-ATCGTAAAGAA-TG 629 Query 14833 GATGAACCAAAATGTGCTTGACCAATTTTG-GAA-ATACGTTAAACTTCGCTTACAAAAC 14890 |||| ||| |||||| | || |||| ||| ||| ||||| | | | |||| Sbjct 628 GATGGACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGGCGTGTTACCGAAAC 569 Query 14891 ACTACATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACTA 14950 | | ||| | | ||||| | || |||||| |||| || || | || |||||| Sbjct 568 A--AAATGTTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACATACGTCACTA 511 Query 14951 CTAACAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATTA 15010 | |||| || ||||| ||||| || | || || ||||||||||| |||| | Sbjct 510 CCTGCAGCTCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATGATACG 451 Query 15011 CATTACACCAATGAAAGACTGCGACTTTAT 15040 |||||| |||| ||||| ||| | |||| Sbjct 450 CATTACTCCAAAGAAAGGTTGCAAAATTAT 421 >seq31223 Length=3647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || |||||||| || || ||||| ||||||||||| | | ||| || | Sbjct 287 CGCAATACTAAATGTAGGGTCGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 346 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || ||||| || ||||| ||||| | ||| || || | ||| | | ||||||| Sbjct 347 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 406 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || || | | | | || ||| || ||| || || | ||||| Sbjct 407 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 466 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || ||||||||||| ||||| Sbjct 467 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428301670037582