Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq21383 219 3e-52 seq53127 105 5e-18 seq31223 100 2e-16 seq207359 96.9 3e-15 seq44559 93.3 3e-14 >seq21383 Length=8822 Score = 219 bits (242), Expect = 3e-52 Identities = 635/966 (66%), Gaps = 21/966 (2%) Strand=Plus/Plus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || ||||||||||| || | || || |||||||| | || | Sbjct 1094 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 1153 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | |||||||| ||||| ||||||||||| || ||||| ||||||||||| Sbjct 1154 CCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAAT 1213 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 || | ||| || |||||||| | || | || ||||| || |||| || Sbjct 1214 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGT 1273 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || |||||||| || || ||||| ||||| || | |||||||| |||||||| Sbjct 1274 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 1333 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || | | ||||||||||| ||||||||||||||||| ||||| ||| | ||| Sbjct 1334 TTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 1393 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACG-TTGTCGGACCCGTT 109499 || ||| | | || ||||| || || || || ||||||||| ||| || || | Sbjct 1394 GCCCGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 1453 Query 109500 TTATTTT--ATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557 || |||| | || | | | || ||| | ||| || | || || || ||| Sbjct 1454 TTCTTTTTAGTTGACAAAT---CTAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTT 1510 Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617 | | | ||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 1511 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 1570 Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCA-ACGCGCGACAGCAAAACGTACATTGCGTTGTT 109676 ||||| || || ||||| | || | | | | | ||| | ||| | Sbjct 1571 GGTGCTAACCCTGACCTCGGTAGCCCAGAAGATGGTGATTGTTATGTAAGT----TTGAT 1626 Query 109677 AAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAA---CAAAACGTACGA 109733 ||||| || || | ||| |||| || || | || | || || | ||||| Sbjct 1627 GAAAGAATTACGTGAGATGCTGGATGA---GCTCTCAGCTAAGAATGGTAAGAAATACGA 1683 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 ||| || || ||||| || || | |||||||| | || || || |||| || Sbjct 1684 ATTAACTTCTGCTATTAGTGCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAAGC 1743 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 ||| | ||| |||| | || || || |||| ||||| ||||| || || |||||||| Sbjct 1744 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 1803 Query 109854 CACGGACT-TAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912 ||| | || |||| ||| | |||||||||| |||||||||| || ||| | Sbjct 1804 -TGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTT 1862 Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972 |||| | || | | || ||| | || | || |||| ||||| || ||| Sbjct 1863 ACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 1922 Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGCG 110031 || | || || || ||||| || || || ||||| |||| || || | | | ||| Sbjct 1923 TAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATG-ATTACAAAGACAAC 1981 Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091 | ||| || |||| ||| | || || || |||| |||||| || |||| ||||| Sbjct 1982 ATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTT 2041 Query 110092 GACTAT 110097 |||||| Sbjct 2042 GACTAT 2047 >seq53127 Length=7988 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||||||||| ||||| ||||||||||| ||||| | || || |||||| Sbjct 6263 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 6204 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 || ||||| || ||| | |||||||| |||||||| || | |||||||||||| Sbjct 6203 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 6144 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||||||| || |||| | | || || | | ||| | || |||||||| Sbjct 6143 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTT 6084 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| |||| ||| || | ||| ||||||||| Sbjct 6083 GCCAGTCAGTGTCTTTACAAATATTTGCATT 6053 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| || | || || | ||||||||| |||||||| ||||| |||||||| | Sbjct 6052 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG-- 5995 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||||| | | |||||| | || || || ||| | ||||| ||||| || ||| || Sbjct 5994 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 5935 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || ||||| || ||||||| ||| |||| | | || || | | | Sbjct 5934 GAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTCAA 5875 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | || ||||| ||||| |||| ||| || | |||||||||||| Sbjct 5874 CTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 5825 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATT 101093 || ||||| |||||||| ||||||||||| || | ||||| | | ||| || | | Sbjct 6940 TGTAAAGTAGATTCTTTCTGAATATTGTAGTCAG--ATAGTGTACGTCCATCCTCAAGCT 6883 Query 101094 GTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTT 101153 | || || ||| | |||||||||||||||||| || | |||||| || || ||||| Sbjct 6882 GCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTT 6823 Query 101154 TTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCG 101213 | || |||| | | || || | || | ||| | || ||||| ||||| | Sbjct 6822 TCGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAG 6763 Query 101214 TCAATGTTTTAATAAAAATTTGCATT 101239 ||| ||| || | ||| ||||||||| Sbjct 6762 TCAGTGTCTTTACAAATATTTGCATT 6737 >seq31223 Length=3647 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092 ||||||||| ||||||||||| || || || || | | ||| | || |||||| ||| Sbjct 70 GTGCAAAGTAGATTCTTTTTGGATGTTATAGTCAG--ACAGTGTACGACCATCTTCTAAT 127 Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152 || ||||||||| | ||||| | |||||| ||| || | |||||||||||| ||| Sbjct 128 TGCTTGCCCGCAAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATT 187 Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212 || |||||||| | | || || | | ||| | ||||| ||||| || Sbjct 188 TTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCA 247 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||| |||||||||||| Sbjct 248 GTGAGTGTTTTAACAAAAATTTGCAT 273 >seq207359 Length=487 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092 ||||||||| ||||||||||| || ||||| || | || || | || |||||| ||| Sbjct 418 GTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACA--GTGTACGACCATCTTCTAAT 361 Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152 || ||||||||| | ||||| | |||||| || || | |||||||||||| ||| Sbjct 360 TGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATT 301 Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212 || |||||||| | | || || | | ||| | ||||| ||||| || Sbjct 300 TTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCA 241 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||| ||| |||||||| Sbjct 240 GTGAGTGTTTTAACAAAGATTTGCAT 215 >seq44559 Length=2984 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||||| ||||| ||||| |||||||||||||| | || ||| |||||| Sbjct 645 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 586 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || ||| | || || | ||||||||| ||| | ||| || || || Sbjct 585 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 526 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTT 101206 ||||| ||| |||| | | || || | | ||| | ||| | |||||| || Sbjct 525 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATG--GTTCTACTTCCAGGGTAATGGTC 468 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||||||||| | ||| |||||||| Sbjct 467 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||| || | ||| |||| ||||||||| || ||||| ||||||||||| || | Sbjct 1118 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 1059 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||| |||| || ||||| || | || || | |||||| ||| ||| Sbjct 1058 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 999 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | || |||||||| || || ||| |||| | | || |||| || ||| Sbjct 998 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGG--GTTCAA 941 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || |||||||| || |||| ||| || | ||| || ||||| Sbjct 940 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408474454840026