Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq237382 246 8e-61 seq237567 172 1e-38 seq237313 143 7e-30 >seq237382 Length=259 Score = 246 bits (272), Expect = 8e-61 Identities = 154/166 (93%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 3540 AAGAAAGCGTCGAGCGGGCTTTAACGTGCGCTAACTGCGGTCAGAAGCTGCATGTGCTGG 3599 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 AAGAAAGCGTCGAGCGAGCTTTAACGTGCGCTAACTGCGGTCAGAAGCTGCATGTGCTGG 153 Query 3600 AAGTTCATGTATGTGAAGCGTGCTGCGCAGAACTGATGAGCGATCCGAATAGCTCAATGT 3659 ||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 154 AAGTTCACGTGTGTGAGCACTGCTGCGCAGAACTGATGAGCGATCCGAATAGCTCGATGC 213 Query 3660 ACGAGGAAGAAGACGATGGCTAAATCAGCGCGAAGACGATGCAAAA 3705 ||||||||||||| |||||||||| |||||||||||||||| |||| Sbjct 214 ACGAGGAAGAAGATGATGGCTAAACCAGCGCGAAGACGATGTAAAA 259 Score = 100 bits (110), Expect = 8e-17 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 3116 ACCTTCAATTACACGGCTCACCTGTGGGATATCCGGTGGCTAAGACATCGTGCGAGGAAA 3175 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ACCTTCAACTACACGGCTCACCTGTGGGATATCCGGTGGCTAAGACGTCGTGCGAGGAAA 60 >seq237567 Length=272 Score = 172 bits (190), Expect = 1e-38 Identities = 201/265 (76%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 5753 CTTCGTGAAGATGGGTGGCAAGAGACTGCGCTAACAGCCTCTTGCCTGATCTGCCCATGC 5812 ||||||||| |||||||| ||| ||||||||| |||| |||| | | ||||| ||| Sbjct 14 CTTCGTGAAAGCGGGTGGCAGGAGGTCGCGCTAACAACCTCCTGCC-GTTTTGCCCGTGC 72 Query 5813 -TCTTAATCACGGACAAACCACGTTACCGCAAAATGTATCCTGGATTTGTTCTTTCCAAT 5871 | | ||||| ||||| | |||| | | ||| |||||||||||||| || Sbjct 73 ATATCGGTCACGAACAAATCTGATTACTAAACACAGTAGCCTGGATTTGTTCTATCAGTA 132 Query 5872 ATCAACCA-ATTCATAAC---ATTGAACAAATCCTCACGGTCGTGAGGTAAGACATGAAA 5927 ||| ||| |||| ||| || || ||||||| | | | | |||||||||||| Sbjct 133 ATCGACCTTATTCCTAATTAAATAGAGCAAATCCCCTTATTGGGG--GTAAGACATGAA- 189 Query 5928 AAGATGCCAGAAAAACATGATCTGTTAACCGCCATGATGGCGGCAAAGGAACAGGGCATC 5987 |||||||||||||||||| ||||| ||||||| | |||||||||||||| |||||| Sbjct 190 --GATGCCAGAAAAACATGACCTGTTGGCCGCCATTCTCGCGGCAAAGGAACAAGGCATC 247 Query 5988 GGGGCAATCCTTGCGTTTGCAATGG 6012 ||||||||||||||||||||||||| Sbjct 248 GGGGCAATCCTTGCGTTTGCAATGG 272 >seq237313 Length=339 Score = 143 bits (158), Expect = 7e-30 Identities = 148/196 (76%), Gaps = 21/196 (11%) Strand=Plus/Plus Query 6700 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 6759 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 120 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 179 Query 6760 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 6798 ||||||||| |||||||| ||| |||| | | || | || Sbjct 180 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 239 Query 6799 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 6858 |||| ||||||| |||||| || ||||| || | |||||||| | |||||| |||||| Sbjct 240 CTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGT 299 Query 6859 TTGCTGATGCTAACGC 6874 | ||||||||||| || Sbjct 300 TAGCTGATGCTAAAGC 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133290035773028