Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq24004 594 7e-165 seq32346 98.7 1e-15 >seq24004 Length=11461 Score = 594 bits (658), Expect = 7e-165 Identities = 1117/1627 (69%), Gaps = 19/1627 (1%) Strand=Plus/Minus Query 75357 TTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGAT 75416 |||||||| || || | || |||||||| | | | |||||||||||| |||| | Sbjct 10016 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 9957 Query 75417 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGG 75476 ||||||| || ||||||| |||| |||| ||| |||||| || || ||||| Sbjct 9956 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 9897 Query 75477 AATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 75536 ||| | || | || | ||| || || | || |||||||| || || |||||||||| Sbjct 9896 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 9837 Query 75537 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 75596 ||||||| ||||| | ||| || || | | ||| ||||| | |||||| | | | Sbjct 9836 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 9777 Query 75597 GTTTGATATCATCTGGAAGATTTGTATTTT---GAATGGATCCGCCATCAGATATAATTG 75653 | | || || | |||| ||| | ||| | || ||||| | ||||||| Sbjct 9776 CTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAA 9717 Query 75654 TATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713 ||| || || || |||| |||||| | | || ||| | | || |||||| | | Sbjct 9716 GATTTTTCATATCGTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGT 9657 Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773 | || | ||||||||||||| || ||||||| ||||||||| ||| | |||| Sbjct 9656 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTT 9597 Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | | ||||||| |||| || | |||||| ||||| || |||||||||||||| || | || Sbjct 9596 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCA 9537 Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 ||| | ||| | | ||||||| || || || ||||| || ||| ||||||| Sbjct 9536 ATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAA 9477 Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATC 75953 | |||| || ||||| | ||| || || || || || | ||| || | || Sbjct 9476 GGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGACTC 9418 Query 75954 CATT-ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCA 76012 | || |||||| ||| | || || |||||||||| ||| ||||| || ||||| ||| Sbjct 9417 CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCA 9358 Query 76013 CCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAA 76072 || |||||||||||||| || || | | ||| ||| | |||| ||| || || Sbjct 9357 CCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAA 9298 Query 76073 GGATAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCT 76131 | ||| | | | | | ||| |||||||| | |||||||| ||||||||||||||||| Sbjct 9297 G-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCT 9239 Query 76132 ATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTT 76191 ||||||| |||| ||| ||| ||||| || | ||| ||| |||||| ||| |||| ||| Sbjct 9238 ATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTTT 9179 Query 76192 ATTGAGATTTCTGACA-ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC 76250 || | |||| ||| || | || | || |||| ||| ||||| |||| | Sbjct 9178 GTTTAAATTT-TGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTGT 9120 Query 76251 CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 || | |||||||| ||||| ||||| || || || || || || || || |||| Sbjct 9119 TATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTT 9060 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | | ||||| | | ||| ||||| ||||| ||||| || ||||| |||||||||| Sbjct 9059 CTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTT 9000 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 ||| || |||||| ||||||| | |||||||| | | | || || ||||| || | Sbjct 8999 TTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCA 8940 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCT--AGCTTTTATTATAGATTTGTA--T 76486 || | ||| ||||| || ||||| | ||||| |||| | | | | ||| || | Sbjct 8939 CTTGGGCTTCTATAATTGACTTCCATA--ACTCTTGAGCTCTGACTT--GTTTTATAAAT 8884 Query 76487 CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACA-TCATC 76545 || || ||| |||||||| | ||||| |||||||| ||||| || || ||| | Sbjct 8883 CGTTTTTCTTCTTCATATTTGGCATATAGTTCGTCAAATTCCTCTCCA-AAGCAGTCAGC 8825 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 | |||||||| |||| |||||||| | ||| | |||| | | || | ||| Sbjct 8824 GAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTT 8765 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 |||||| ||||| |||||||||| |||| ||| || |||| | ||| |||||| || Sbjct 8764 CATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTT 8705 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 ||||| ||||| || | ||| | ||| || | ||||| | |||||| || |||| ||| Sbjct 8704 ACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAATA 8645 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 || || | | || || ||||| || || || ||||||| |||||||||||| || || Sbjct 8644 AATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTT 8585 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 ||| |||||||||||||| | | || || || ||||| || |||| || ||| Sbjct 8584 ATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGA 8525 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 || || | || | || || ||||| || || || |||||| |||| Sbjct 8524 ACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAA 8465 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 ||||| |||| || || ||| |||| || || || ||||| || |||| | ||| Sbjct 8464 TGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCTTTCATAGCTATAAG 8405 Query 76966 AAAACAG 76972 |||||| Sbjct 8404 GAAACAG 8398 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 |||||| ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 7901 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 7842 Query 77197 TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTT 77247 | ||| ||||| || |||| ||| | || | || ||||||||| | ||| Sbjct 7841 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 7791 >seq32346 Length=5591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || |||| ||||||||||| || ||||| || || || || |||||||||||||| | | Sbjct 4158 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 4217 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 |||||||| |||||||||| || || |||||||| | | ||||||| Sbjct 4218 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 4266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710816860068480