Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq53127 114 3e-20 seq88586 111 4e-19 seq44559 109 1e-18 seq31223 100 7e-16 seq207359 98.7 2e-15 >seq53127 Length=7988 Score = 114 bits (126), Expect = 3e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || | |||||| ||||| || ||||||||||| | || || | |||||| Sbjct 6037 AGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCT 5978 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || ||||| || ||||| || | | ||||| || || | Sbjct 5977 TCAAGCTGCTTT--CCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTAT 5920 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||||||| ||| ||| | || | | || ||| ||| ||||| | ||| |||| Sbjct 5919 CCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAG 5860 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 | ||||| || || ||||| ||||| | |||||| |||| Sbjct 5859 TCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATTCCACCC 5819 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||| || ||||| || || ||||| | | || | |||||||| | Sbjct 6260 CAAG-TGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCA 6202 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || || ||||||||||| ||||| | | || ||||| || ||||||| Sbjct 6201 GCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAA 6142 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| || ||| | |||| | || ||| || ||||| | || |||||||||| Sbjct 6141 TTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGC 6082 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| || || | |||||| Sbjct 6081 CAGTCAGTGTCTTTACAAATATTTGCATT 6053 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | |||||| ||||| || || ||||| || | || || | ||||| Sbjct 6949 AGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGTGTACGTCCATCC 6890 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || |||||||| || ||||| | | || |||||||| | Sbjct 6889 TCAAGCTGCTTT--CCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTAT 6832 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| || ||| | || | |||| || ||| ||||| || || |||| Sbjct 6831 CTTGAATTTTCGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAG 6772 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| || || ||||| || || | |||||| Sbjct 6771 TCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 6737 >seq88586 Length=4530 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| | || || || ||||| |||||||| || | || || | Sbjct 2188 AGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGT 2247 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | |||||||| | | || |||||| Sbjct 2248 CCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCC 2307 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| ||| ||| | |||| | || || ||| || || || ||| Sbjct 2308 TTATCTTGGATTTTAGCTTTAACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTA 2367 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||| || ||||| ||||| | |||||| Sbjct 2368 ATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 2406 >seq44559 Length=2984 Score = 109 bits (120), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || |||||||| ||||| ||||| || | | || | Sbjct 882 GAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCG 823 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || ||||||||||| | || || || | | |||||||| Sbjct 822 GCCATCTTCCAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTC 763 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||| ||| | || | | |||||||| ||| ||||| | ||| Sbjct 762 CTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGAAGGCTCAACTTCCAAAGT 703 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || || | |||||| Sbjct 702 TATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 663 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||||||||||||||||||||| || | | || | |||||| Sbjct 419 AGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 360 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || || || |||||||| | || || || | | || || || || ||| Sbjct 359 TCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCT 300 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | |||| || ||| || || ||||| ||||| Sbjct 299 TGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTC 240 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || | ||||| Sbjct 239 TTGCCTGTTAGTGTCTTGACAAATATTTGCAT 208 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | |||||| |||||||||||||| || || | || ||| | ||||| Sbjct 1331 AGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGATAGAGTGCGGCCATCC 1272 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| || | ||| ||||| | | || || ||||| ||| Sbjct 1271 TCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 1212 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | |||| || ||| || || | ||| || || Sbjct 1211 TGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTC 1152 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || |||| |||||| Sbjct 1151 TTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 1120 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| |||||||| |||||||||||||| || | | || | |||||| Sbjct 191 AGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 132 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || |||||||| | |||||| || | | ||| || || || ||| Sbjct 131 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 72 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| | || | | || || || ||||| || ||||| || Sbjct 71 TGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTC 12 Query 152073 TTGCCCGTGAG 152083 || || || || Sbjct 11 TTTCCAGTTAG 1 >seq31223 Length=3647 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || || ||||| || || ||||| | ||| || | |||||||| || Sbjct 298 ATGTAGGGTCGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTG 357 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || ||||||||||| || || | | || || || || ||||| || || Sbjct 358 TTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTT 417 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || ||| | || | |||| || |||||| || | ||| || ||||| || || Sbjct 418 TGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGT 477 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || |||| ||||||| Sbjct 478 AAGAGTCTTAACAAAGATCTGCATT 502 Score = 100 bits (110), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| |||||||| || || || || | | ||| | || ||||| | Sbjct 523 CAAG-TGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTCTTCCA 581 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||| || | | || || || | | || |||||||| ||||| Sbjct 582 ATTGCTTT--CCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTG 639 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | | || ||| || ||||| | |||||| ||||| Sbjct 640 AATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTT 699 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| |||| ||||||||| Sbjct 700 ACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 732 >seq207359 Length=487 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || ||||| || ||||| || || ||||| | ||| || | |||||||| || Sbjct 190 ATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTG 131 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || |||||||| || || | | || || || || ||||| || || Sbjct 130 TTTTCCAGCGAAAATCAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTT 71 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || ||| | || | |||| || ||||| ||||||||||| ||||| || || Sbjct 70 TGCCTTCACATTTTCGATAGTGTCGGACGGTTCTACCTCAAGAGTAATGGTTTTTCCTGT 11 Query 152081 GAGAGTCTT 152089 |||||||| Sbjct 10 AAGAGTCTT 2 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 |||||| ||||||||||||||||| || | | || | |||||||||| || || Sbjct 412 AGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCC 353 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 || || ||||| | || || |||| | || ||||| || ||||| ||||| ||| Sbjct 352 CGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTT 293 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | |||| ||| || ||||| | |||||| ||||| || ||||| || Sbjct 292 CACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGT 233 Query 152087 CTTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 232 TTTAACAAAGATTTGCAT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150308074062994