Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq21383 178 9e-40 seq44559 109 4e-19 seq88586 105 5e-18 seq53127 98.7 7e-16 >seq21383 Length=8822 Score = 178 bits (196), Expect = 9e-40 Identities = 770/1208 (64%), Gaps = 41/1208 (3%) Strand=Plus/Minus Query 5735 TGTTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCC 5793 ||||||| | |||| || ||||||| || | | ||| ||||| || ||||| | |||| Sbjct 2285 TGTTACCGAGACCCATG-TTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCC 2227 Query 5794 CATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGAC 5853 || |||| ||||| || ||| || | | |||||||| ||||| | | || || Sbjct 2226 CAAGCAAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGAT 2167 Query 5854 CTCTCGTCGTCGTAGGTGACGAGATCGTC-GTTG-TGGT----ACACGTAGGGCGCTTGC 5907 || | | || ||||| || ||||| | |||| |||| | ||||| || ||||| Sbjct 2166 CTAGCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAGACGTAAGGGGCTTGG 2107 Query 5908 GCCACTCCGTCGTAAT-----------TCGGGTTGGG--ATACCGGTTCGTGATGTCTTT 5954 || || |||||||| | | ||| | || | |||| || || | Sbjct 2106 GCGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCGATTTCA-TTCGCAATCTCCCT 2048 Query 5955 GTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAA 6014 ||||| || || |||| || ||| | || || || || || || || |||||||||| Sbjct 2047 ATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAA 1988 Query 6015 GGGATTGTTGTTGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGCC 6074 |||| |||||| || | || | ||| ||| || | || ||||| || || || Sbjct 1987 GGGAATGTTGTCTTTGTAATCATGAACGCCAGTCCAACCACGACCATACATAGCAACACC 1928 Query 6075 CACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGGT 6134 || || | || || || ||||| | ||| |||| | || || | || | | Sbjct 1927 TACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTCCAAAGTCAGA 1868 Query 6135 GGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGATC 6194 ||||| |||| |||| ||||| | |||||||||| ||||| || |||| ||| Sbjct 1867 TGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 1808 Query 6195 GGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACTC 6254 || ||||||||||||||||| ||||| |||| | |||||||||||||| ||| | Sbjct 1807 ATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 1748 Query 6255 CTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTGT 6314 || | ||||| || ||||| | ||||| || | || | || || || || Sbjct 1747 TTGAGCTTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGCACTAATAGCAGAAGT 1688 Query 6315 GAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCGCC 6374 | || || ||| | || || | |||||||| | | || Sbjct 1687 TAATTCGTATTTCTTACCATTCTTAGCTGAGAGCTCATCCAGCATCTCACGTAATTCTTT 1628 Query 6375 CAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCTCC 6434 || | | ||| | || || ||| | | || | | |||| || || || Sbjct 1627 CATCAAACTTACATAACAATCACCATCTTCTG---GGCTACCGAGGTCAGGGTTAGCACC 1571 Query 6435 CTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCCAG 6494 ||||| || || || |||||||| || || || || |||||||| ||||| ||| || Sbjct 1570 TTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAG 1511 Query 6495 AAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAAAA 6554 ||| || | || || || || |||| ||| |||| | | | || Sbjct 1510 AAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAA 1451 Query 6555 GGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGAT----GCGGATTGT 6610 |||||| |||||||||||||| || || || || || ||| | |||| | | Sbjct 1450 AGGATCGGCAAGCGTCCACCCACCAATAGATGGAAGAATCTTCAATTCAGGGCGGGCT-T 1392 Query 6611 GTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTA----CATTTCCGAGTAGGCC 6666 ||||| || | ||| | || || || || || ||||| |||| | || | Sbjct 1391 GTTTTAGT---GACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGAC- 1336 Query 6667 TCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGAAG 6726 | || || || |||||||||| ||| ||||| |||||| || || || |||||| Sbjct 1335 ---AATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAG 1279 Query 6727 TCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAGA 6786 || || || || || |||||||| || |||| ||| ||| | || ||| | | Sbjct 1278 TCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAA 1219 Query 6787 GCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGAGA 6846 || ||||| || || || ||||| || || | || ||||| |||| ||| || ||| Sbjct 1218 CTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGA 1159 Query 6847 TTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGAAG 6906 || || || || || | || |||| || | || || |||||||| || |||||| Sbjct 1158 TTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAG 1099 Query 6907 TAAGCTCC 6914 || || || Sbjct 1098 TAGGCACC 1091 >seq44559 Length=2984 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || | ||||| || ||| ||||||||||| Sbjct 444 TATTTGCATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTT 385 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || ||| | || || |||||||| || |||||||| | ||| || || Sbjct 384 GTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTG 325 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||||| || | ||| || || || ||||| ||| | || | |||||||| | Sbjct 324 ATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGA 265 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| || || ||||| || || || ||||| || || |||||||| Sbjct 264 TGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || || ||||| || ||||||||||||||| Sbjct 216 TATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTT 157 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || ||| | || |||| ||||| || |||||||| | ||||||||| Sbjct 156 GTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTG 97 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||| | || | || || || || || || || | || | || || || | Sbjct 96 ATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGA 37 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || |||||| |||| ||||| |||||||| || || Sbjct 36 GGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAG 1 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||||||||| || || | || ||| | || || | ||| || || |||||| Sbjct 1310 TCTTTTTGGATGTTATAGTCCGATAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAG 1251 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||| || |||| || | || ||||| || ||||| ||| | || Sbjct 1250 ATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTT 1191 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| | |||||||||| || || ||||| || || || ||||| || Sbjct 1190 TCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACA 1131 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 1130 AAGATCTGCAT 1120 >seq88586 Length=4530 Score = 105 bits (116), Expect = 5e-18 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| || | | | || | || || || || || || |||||| Sbjct 2215 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 2274 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGT 44265 |||||||| ||||| |||| || | ||||||||| || || || |||| || | Sbjct 2275 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGAT-TTTAGCTTTAACATT 2333 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||| || || | || |||||||| | ||||| || || ||||| |||||||| || Sbjct 2334 TTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGAC 2393 Query 44326 GAAGATTTGCATGATGTGA 44344 ||| |||||||| ||||| Sbjct 2394 GAAAATTTGCAT--TGTGA 2410 >seq53127 Length=7988 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| ||||| | || |||||||| || || || ||||| || || || | Sbjct 7648 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGAC 7589 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | | |||| | || ||||| ||||| ||||| || |||| | || ||||||| ||| Sbjct 7588 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 7529 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| || ||||| ||| | || |||| || || | | ||||||| Sbjct 7528 ATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACC 7469 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || || || || || || ||||| || || |||||||| Sbjct 7468 TCCAAAGTGATAGTTTTCCCAGTCAGCGTCTTTACAAAAATTTGCAT 7422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| || | ||| | || ||||| ||||| || || Sbjct 5831 TTGCATTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATA 5772 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| |||| | || |||| ||||| ||||| || || | | || ||||| Sbjct 5771 GTCTGACAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATC 5712 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||||| || ||||| ||| | || | || || || | | Sbjct 5711 TGGAGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGC 5652 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||| |||| || || || || || || | || || |||||||||||||||||| Sbjct 5651 TTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATG 5594 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| |||||||| | | || ||||| | || || || || ||||| Sbjct 6062 TATTTGCATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTT 6003 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | ||| ||| | || || |||||||| || ||||| || | | ||||| Sbjct 6002 GTAATCAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTG 5943 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGG 44279 ||||| || | || || || ||| | | || ||||| || || | || || || | Sbjct 5942 ATCTGGGGGAATTCCCTCTTTATCC-TGAATTTTTGCTTTAACATTTTCAATTGTATCAG 5884 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 5883 AAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 5826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358947896375838