Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq53127 141 2e-28 seq88586 138 3e-27 seq31223 127 5e-24 seq44559 123 6e-23 seq207359 122 2e-22 seq1324 98.7 2e-15 >seq53127 Length=7988 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| ||||| | || |||||| || || Sbjct 5601 CAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGAT 5660 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||| ||||| ||||| |||||||| || || ||| Sbjct 5661 ACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAACAA 5720 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || | |||||||| | || || | || ||||| || Sbjct 5721 AGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTGTCAGACTATAATATC 5780 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || ||||| || |||| | |||||| | || || Sbjct 5781 CAGAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAG 5818 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| | || || ||||| ||||| | || |||||| || || Sbjct 6969 CAAATTTTTGTGAAAACATTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCTGAT 7028 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 7029 ACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAACAA 7088 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || ||||||||| | || | | || ||||| || Sbjct 7089 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCAGACTATAATATC 7148 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || ||||| | |||||| | || ||| Sbjct 7149 CAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGA 7187 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| ||||| | ||||||||| || || Sbjct 7425 CAAATTTTTGTAAAGACGCTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTCTGAT 7484 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| || || ||||| || ||||| || || ||| Sbjct 7485 ACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAACAA 7544 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || |||||||| | || | | || ||||| || Sbjct 7545 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAATATC 7604 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || || |||||| | ||||| ||| Sbjct 7605 CAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTTAGA 7643 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || ||||| | || || || || || Sbjct 5829 CAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTCTGAT 5888 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| |||||||| ||||| ||||| || || || |||||| Sbjct 5889 ACAATTGAAAATGTTAAAGCAAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAA 5948 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || ||||| ||||| ||||||||| | || || | ||||| ||| | Sbjct 5949 AGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACAACATT 6008 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || |||| || || Sbjct 6009 CAGAAAGAATCTACTTTGCACCTAGT 6034 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||| ||||| | || |||||| || || Sbjct 6057 CAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTCTGAT 6116 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||| ||||||||||| || ||||| ||||| || Sbjct 6117 ACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAACAG 6176 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || ||||||||||| ||||||||| | || || | |||||||| | Sbjct 6177 AGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAATATT 6236 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || |||| |||| Sbjct 6237 CAAAAGGAATCTACTTTGCA-CTTG 6260 >seq88586 Length=4530 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| || |||||||||||||| ||| || Sbjct 2402 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTCTGAT 2343 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || || ||||| || || || ||||||||| Sbjct 2342 ACTATAGAAAATGTTAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAA 2283 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||| | || | | || || ||| | Sbjct 2282 CGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAACATT 2223 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| ||| |||||||||| Sbjct 2222 CAAAAGGAATCCACATTGCATCTTGT 2197 >seq31223 Length=3647 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| ||||| |||||||| || || | || || ||| || ||| Sbjct 270 CAAATTTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAC 211 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || ||||| || || ||| Sbjct 210 ACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAA 151 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | |||||||| | || || | || |||||| || Sbjct 150 CGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTATAACATC 91 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || |||| Sbjct 90 CAAAAAGAATCTACTTTGCA 71 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||||||||| ||||| | ||||| || || ||| Sbjct 498 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCCGAC 439 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||| || |||||||| || || || || || || || Sbjct 438 ACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 379 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || |||||||| || |||||||| | || | | |||||||| | Sbjct 378 AGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAATATT 319 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 318 CAAAAGGAATCGACCCTACATTTAGTATTG 289 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| || || || ||||| || || | || || ||| Sbjct 732 AAAATGC---AGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 676 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| || ||||| ||||| ||||| || ||||| Sbjct 675 CCTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCA 616 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || ||||| ||||| || | ||||| ||| | |||||| | || Sbjct 615 GATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGAC 556 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | ||||||||||| || || || |||| Sbjct 555 TATAATATTCAAAAAGAATCTACTCTTCA-CTTG 523 >seq44559 Length=2984 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || |||||||| || || | || || || |||||| Sbjct 667 CAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCTTCAGAC 726 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| |||||||| || || |||||||| ||||| || || ||| Sbjct 727 ACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 786 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || || || |||||||| | || || | || || || || Sbjct 787 CGTCTTATCTTCGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCTGACTACAATATC 846 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 847 CAGAAAGAGTCCACCCTTCA-CTTG 870 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || ||||| | |||||||| || ||| Sbjct 1123 CAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCCGAC 1182 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| || ||||| || || || || || ||||| || Sbjct 1183 ACTATCGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAG 1242 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||| | || ||||| | ||||| | || |||||| || Sbjct 1243 CGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTATCGGACTATAACATC 1302 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || ||||| Sbjct 1303 CAAAAAGAATCTACTTTGCAT 1323 >seq207359 Length=487 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| |||||||| || || | || || ||| || ||| Sbjct 218 CAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAC 277 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || |||||||| || ||| Sbjct 278 ACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAA 337 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | |||||||| | || || | || || ||| || Sbjct 338 CGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAACATC 397 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || |||| Sbjct 398 CAAAAAGAATCTACTTTGCA 417 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 || ||||| ||||||||||| || || || ||||| ||| || ||||| ||||| || Sbjct 2 AAGACTCTTACAGGAAAAACCATTACTCTTGAGGTAGAACCGTCCGACACTATCGAAAAT 61 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || || |||||| || |||||||| || || || || || || || | || || ||| Sbjct 62 GTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTGATTTTC 121 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || |||||||| || |||||||| | || | | |||||||| | ||||| ||||| Sbjct 122 GCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAATATTCAAAAGGAATCT 181 Query 178116 ACACTGCATCTTGTTTTG 178133 || || ||| | || ||| Sbjct 182 ACCCTACATTTAGTATTG 199 >seq1324 Length=7229 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| ||||| || ||| ||| Sbjct 1660 CAGATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAC 1601 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || |||||||| || || ||||| || |||||||| ||||| || || |||||||| Sbjct 1600 ACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCA 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200066525375116