Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5177 491 5e-134 seq197295 86.0 7e-12 >seq5177 Length=4331 Score = 491 bits (544), Expect = 5e-134 Identities = 1094/1621 (67%), Gaps = 43/1621 (3%) Strand=Plus/Minus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 3775 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 3716 Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909 |||||||| ||||||| ||| | |||| ||| ||||| || |||||||| | Sbjct 3715 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 3656 Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 3655 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 3596 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 53028 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 3595 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 3536 Query 53029 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATAGATCCACCATCTACCATAATCCT 53085 ||| || |||| || | ||| | ||| || ||||||||| | ||||| Sbjct 3535 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 3477 Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 53144 ||| || || || |||| |||||| | |||| || ||| | | || ||||| | | Sbjct 3476 ATTTTTCATATCTTCATCCCATAA-ATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGT 3418 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 3417 TCACTACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 3358 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | ||| ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 3357 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 3298 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 ||| | ||| | | ||| ||||| || || || ||||| || |||| | ||| Sbjct 3297 ATAGAGAATTACGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTCCCA 3240 Query 53323 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 53381 ||| || | || || || ||||| | || || | || Sbjct 3239 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC- 3181 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 |||| |||||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 3180 TTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 3121 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 |||| |||||||| ||||| || || | | ||| || | ||||| | || || Sbjct 3120 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 3061 Query 53502 ATGGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | || || | | | | | ||| | ||||| | || |||||||||||||||||||| Sbjct 3060 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGA 3002 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 3001 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 2942 Query 53621 TTATTGAGGTTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 53677 || || | ||| | ||||| ||| | | || || | ||| |||| |||| Sbjct 2941 TTGTTTAAATTTTGAGTCACAAT--CTTAG-TGATTTCTTTTAATTTTTTAAAACTAAAT 2885 Query 53678 TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737 | || | ||||||||||| | ||| || || || || || || || || || ||| Sbjct 2884 CGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCA 2825 Query 53738 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 2824 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 2768 Query 53795 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCA 53854 | ||||| ||||||||||||| |||| || ||||||||||| | || |||| |||||| Sbjct 2767 AGATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCA 2708 Query 53855 GTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTG 53914 || || | || | ||||||||| | ||||| | | |||| | | | | ||| Sbjct 2707 GTCTCCACTTGAGCTTCTATAATAGACTTCCATAACTCTTGAGCTCTGA--CTCGTTTTA 2650 Query 53915 T--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACAT 53972 | | | |||||| ||| ||| | ||| | ||| || || ||||| || | Sbjct 2649 TAAACCGTTTTTCTTCTTCATATTTGGCATATAGGGCTTCGAATTCCTCTCCGTAACAGT 2590 Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CA 54029 | | |||||||| |||| |||||||| | ||| ||| |||||||| | Sbjct 2589 CAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTA 2533 Query 54030 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 54089 | | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || Sbjct 2532 CCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 2473 Query 54090 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 | || || ||||| |||||||| | ||| | |||| | | || || | |||||| || | Sbjct 2472 CTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCT 2413 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 | ||||| || | | | || || ||||||||||| || ||||||| ||||| || | Sbjct 2412 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 2353 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 | || || || |||||||||||||| | | |||||| || | ||||| || || | | Sbjct 2352 TATTGTTGTACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTA 2293 Query 54270 TATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCCATTT 54326 |||| || ||| | ||| || || || || |||||| || || || || Sbjct 2292 TATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATT 2236 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 |||| |||||||| ||| ||||||| ||||| | || || || || ||||| || ||| Sbjct 2235 TAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCA 2176 Query 54387 T 54387 | Sbjct 2175 T 2175 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| |||| ||| || ||| ||||||||||||||||||||||||||||||| Sbjct 1678 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 1619 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 1618 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 1568 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 1022 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 963 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||| || ||| ||||| ||||| || | ||| | || | || | ||| Sbjct 962 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 903 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 902 GTTACACCAGAATATATGCC 883 >seq197295 Length=1118 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 393 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 334 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || ||||| ||||||| ||||| || ||||| || Sbjct 333 CATATGTCGGGATATTGGATTGGGAATATAACGAA 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591326126303520