Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25]
322,774 sequences; 210,868,349 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 491 5e-134
seq197295 86.0 7e-12
>seq5177
Length=4331
Score = 491 bits (544), Expect = 5e-134
Identities = 1094/1621 (67%), Gaps = 43/1621 (3%)
Strand=Plus/Minus
Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849
|||||| | ||||| | || || ||||| | | | ||| ||||| || |||| |||
Sbjct 3775 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 3716
Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909
|||||||| ||||||| ||| | |||| ||| ||||| || |||||||| |
Sbjct 3715 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 3656
Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969
|| | || | || | ||| || || | |||||||||||| || || || ||||| ||
Sbjct 3655 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 3596
Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 53028
|| || ||||| | |||| || || ||| ||| ||||| | ||||| || || ||
Sbjct 3595 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 3536
Query 53029 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATAGATCCACCATCTACCATAATCCT 53085
||| || |||| || | ||| | ||| || ||||||||| | |||||
Sbjct 3535 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 3477
Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 53144
||| || || || |||| |||||| | |||| || ||| | | || ||||| | |
Sbjct 3476 ATTTTTCATATCTTCATCCCATAA-ATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGT 3418
Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204
| ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||
Sbjct 3417 TCACTACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 3358
Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264
| | ||| ||| | || || | |||||| ||||| || ||||||||||||||||| | ||
Sbjct 3357 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 3298
Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 53322
||| | ||| | | ||| ||||| || || || ||||| || |||| | |||
Sbjct 3297 ATAGAGAATTACGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTCCCA 3240
Query 53323 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 53381
||| || | || || || ||||| | || || | ||
Sbjct 3239 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC- 3181
Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441
|||| |||||| ||||| ||||| || || |||| ||||||||| || |||||||
Sbjct 3180 TTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 3121
Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501
|||| |||||||| ||||| || || | | ||| || | ||||| | || ||
Sbjct 3120 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 3061
Query 53502 ATGGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560
| || || | | | | | ||| | ||||| | || ||||||||||||||||||||
Sbjct 3060 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGA 3002
Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620
| || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | |
Sbjct 3001 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 2942
Query 53621 TTATTGAGGTTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 53677
|| || | ||| | ||||| ||| | | || || | ||| |||| ||||
Sbjct 2941 TTGTTTAAATTTTGAGTCACAAT--CTTAG-TGATTTCTTTTAATTTTTTAAAACTAAAT 2885
Query 53678 TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737
| || | ||||||||||| | ||| || || || || || || || || || |||
Sbjct 2884 CGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCA 2825
Query 53738 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794
| | || | | ||||| | | ||||||||||||||| ||||| || || || ||
Sbjct 2824 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 2768
Query 53795 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCA 53854
| ||||| ||||||||||||| |||| || ||||||||||| | || |||| ||||||
Sbjct 2767 AGATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCA 2708
Query 53855 GTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTG 53914
|| || | || | ||||||||| | ||||| | | |||| | | | | |||
Sbjct 2707 GTCTCCACTTGAGCTTCTATAATAGACTTCCATAACTCTTGAGCTCTGA--CTCGTTTTA 2650
Query 53915 T--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACAT 53972
| | | |||||| ||| ||| | ||| | ||| || || ||||| || |
Sbjct 2649 TAAACCGTTTTTCTTCTTCATATTTGGCATATAGGGCTTCGAATTCCTCTCCGTAACAGT 2590
Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CA 54029
| | |||||||| |||| |||||||| | ||| ||| |||||||| |
Sbjct 2589 CAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTA 2533
Query 54030 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 54089
| | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||
Sbjct 2532 CCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 2473
Query 54090 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149
| || || ||||| |||||||| | ||| | |||| | | || || | |||||| || |
Sbjct 2472 CTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCT 2413
Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209
| ||||| || | | | || || ||||||||||| || ||||||| ||||| || |
Sbjct 2412 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 2353
Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269
| || || || |||||||||||||| | | |||||| || | ||||| || || | |
Sbjct 2352 TATTGTTGTACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTA 2293
Query 54270 TATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCCATTT 54326
|||| || ||| | ||| || || || || |||||| || || || ||
Sbjct 2292 TATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATT 2236
Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386
|||| |||||||| ||| ||||||| ||||| | || || || || ||||| || |||
Sbjct 2235 TAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCA 2176
Query 54387 T 54387
|
Sbjct 2175 T 2175
Score = 102 bits (112), Expect = 1e-16
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627
||| |||||||| |||| ||| || ||| |||||||||||||||||||||||||||||||
Sbjct 1678 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 1619
Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678
| ||| |||| || |||| ||| | |||| | ||| ||||| | |||
Sbjct 1618 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 1568
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838
|| || || ||||| |||| ||| |||| |||||||| || || | ||||||||||||
Sbjct 1022 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 963
Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898
||||| | ||| || ||| ||||| ||||| || | ||| | || | || | |||
Sbjct 962 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 903
Query 54899 GTTACTCCATTATATATTCC 54918
||||| ||| |||||| ||
Sbjct 902 GTTACACCAGAATATATGCC 883
>seq197295
Length=1118
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680
||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | |
Sbjct 393 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 334
Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
|| ||||| ||||||| ||||| || ||||| ||
Sbjct 333 CATATGTCGGGATATTGGATTGGGAATATAACGAA 299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591326126303520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |