Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq21365 212 5e-50 seq2512 210 2e-49 seq153336 98.7 8e-16 seq117972 91.5 1e-13 seq134269 84.2 2e-11 >seq21365 Length=2821 Score = 212 bits (234), Expect = 5e-50 Identities = 491/726 (68%), Gaps = 17/726 (2%) Strand=Plus/Plus Query 102323 TTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGA 102382 || ||||| || ||||| || || |||||||| | ||| || | ||| | | ||||| Sbjct 609 TTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGA 668 Query 102383 GCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGC 102442 ||| | |||| | || || ||||| || | || || ||||| || |||| Sbjct 669 GCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTCAAT 728 Query 102443 TCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAG 102501 ||||| ||||| | || ||||| || || || ||||| | || || ||||||| Sbjct 729 TCGTATTTCTTGC-CATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCAT 787 Query 102502 CAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTT 102561 |||| | || || | || || | | | ||||| | ||||| || || || Sbjct 788 CAAACTTACATAACAATCACCATCTT-CTGGGC--TACCGAGGTCAGGGTTAGCACCTTT 844 Query 102562 GCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAA 102621 || || ||||||||||||||||| || || || ||||| || ||||| | | ||| Sbjct 845 ACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGAAA 904 Query 102622 CTCTTTAACGGATTCGACAAACACGCGCCGCTTGTCCGCGTCGTGCATGAAATAGAAC-- 102679 ||| || || || | ||||| || | ||| | | | || | ||| |||| Sbjct 905 CTCCTTTACTGACTGCACAAAT-CGTGTT-CTTTTA-GATTTGTCAACTAAAAAGAAGAA 961 Query 102680 -GGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAG 102738 || |||| |||||||| || ||||| || || || || ||||| | ||| || | Sbjct 962 AGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCGGGCTTG 1021 Query 102739 CTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCC 102798 || | ||| || |||||||||||||||||||||||||||||||||| || | || Sbjct 1022 TTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCC 1081 Query 102799 CTTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCG 102858 ||||| || ||||||| || ||||| || |||||||| | ||| || ||||| | || Sbjct 1082 TTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACG 1141 Query 102859 GCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCC-GGGAATGGTCTTGAGCGCGTCGT 102917 ||| | || || || ||||| |||| |||||||| || | || ||| || | Sbjct 1142 GCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGC-TATCAT 1200 Query 102918 TTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCA 102977 ||| ||||| ||||||||||| || || ||||| || |||| ||| | || || || | Sbjct 1201 TTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTA 1260 Query 102978 GCGGCACTTTGTCCACCGGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATACGC 103035 || | ||||| || || || || ||| || ||||| |||||||| || || Sbjct 1261 TAGGTATACGATCCACGGGGAATTTCCTAGG--GTAGACACCCCATTCTACGAAGTAGGC 1318 Query 103036 GGCCAC 103041 | |||| Sbjct 1319 GCCCAC 1324 >seq2512 Length=3386 Score = 210 bits (232), Expect = 2e-49 Identities = 230/306 (75%), Gaps = 5/306 (2%) Strand=Plus/Plus Query 29024 CACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCG 29083 |||||||| || | |||| ||| ||| |||| |||||||| || ||| | ||||| || Sbjct 970 CACGCCTCCGTGACCACCTTCTGTACATAGTCTCGGCCCTTTACCAGCTGGACGTAAGCG 1029 Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143 || |||||| ||||||| ||||| |||| ||||||| |||||||| ||||| ||||| Sbjct 1030 CATCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTG 1089 Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203 || |||||||| ||| | |||||| || |||||||||||||| ||||| |||||||| Sbjct 1090 AGCCCGCCGTCACAGTAGAAGCACTTAGTTTTGTCGCCCTGGCCGGTGTAGAAGAATCCC 1149 Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263 |||||||| | || ||||| ||| |||| | ||||||||| || ||| ||||| Sbjct 1150 GCCTCGGCGAGTTCCTCGGGTTTCTGCTTCATGCTGCGGGGCCAGTCGCTGAAGCTGCGC 1209 Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGGCCGCCGACCGCGCCGGCGGGGCG 29323 | || || || | | |||||| ||| |||| ||| | || || |||||||| Sbjct 1210 ATGCGAGCCGCCTTGGAGGCATAGCGCGCGTGCACGG-----GGTCGGGCATGCGGGGCG 1264 Query 29324 CGGTCG 29329 ||| || Sbjct 1265 CGGGCG 1270 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 29354 CGCACAAACGGACACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTT 29413 |||| || || ||||| ||||||||||| | ||||||| | | || ||||||||| Sbjct 1366 CGCAGGAAGGGGCACTGGGGCGCCCACCGTTGGTGGTCCTTAGCGGGATCGTCGCCCGCG 1425 Query 29414 ACCCAATTCGTAATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAG 29473 ||||| ||| |||| ||||| || |||||||||||||| || || || |||||||||| | Sbjct 1426 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCACCGCGGCCCAGG 1485 Query 29474 TAGTAGAACCCG 29485 || ||||| ||| Sbjct 1486 TAATAGAAGCCG 1497 >seq153336 Length=250 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||||||| || ||||| || ||||||||||||| ||| || | | || ||||| || Sbjct 30 TGCAAAGTAGATTCCTTCTGGATGTTATAGTCCGACAGTGTGCGCCCATCTTCCAGTTGC 89 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || || |||| | ||| || ||||| || | |||||||||||| |||||| Sbjct 90 TTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 149 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | ||| |||||| | ||| ||| | ||||| || || || ||| Sbjct 150 GCCTTAACATTTTCGATTGTATCAGAAGCTTCCACTTCTAAAGTAATAGTTTTTCCAGTT 209 Query 21153 AACGTTTTGACAAATATTTGCATT 21176 | ||||| ||||| ||||||||| Sbjct 210 AGTGTTTTTACAAAAATTTGCATT 233 >seq117972 Length=685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || || ||||||||||| || || | || || | | || ||| Sbjct 64 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCC 123 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | || || || ||| | ||||| | |||||| || || | ||| || ||||| | Sbjct 124 AATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGG 183 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || ||| || | | | ||||||| ||| ||| ||||| ||||||||||| Sbjct 184 ATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTTT 243 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 || |||| ||||| ||||| || |||||| Sbjct 244 CCAGTTAGGGTTTTAACAAAAATCTGCATT 273 >seq134269 Length=2059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 || |||||||||||||||||| ||| | | |||| | | | ||||| ||||||||| Sbjct 65 GGTGGCGTGGGGCTGAACCTGTGCGGTGCGAGCCACTTGCTGCTTCTGGACCCGCACTGG 124 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839 |||||||| | ||| |||||| || |||||| | ||||| |||| ||| Sbjct 125 AACCCGCAGCTGGAGGAGCAGGCCCAGGACCGCGTGTACCGCGTGGGGCAG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420598113328184