Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2512 187 2e-42 seq21365 118 8e-22 seq153336 98.7 8e-16 >seq2512 Length=3386 Score = 187 bits (206), Expect = 2e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 |||||||||| | |||||||||| ||||||| | | || || || || |||||||||| Sbjct 1195 ACTGGCCCCGCAGCATGAAGCAGAAACCCGAGGAACTCGCCGAGGCGGGATTCTTCTACA 1136 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | || ||||| || ||||||||||| ||||||||||| | || || |||||| Sbjct 1135 CCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGACTGGGAGA 1076 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||||| ||||| ||||| |||| Sbjct 1075 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGATGCGCTTACGTCCAGC 1016 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443 | || ||||| ||||||| |||||||| || ||||||| || |||| Sbjct 1015 TGGTAAAGGGCCGAGACTATGTACAGAAGGTGGTCACGGAGGCGTGCG 968 >seq21365 Length=2821 Score = 118 bits (130), Expect = 8e-22 Identities = 329/500 (66%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || ||||||||||| || ||||| || || ||||| || ||||| Sbjct 833 GTTAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCA 892 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || |||||||| || ||||||||| | || | | | || || Sbjct 893 TGTTAGGAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTTTTAG---ATTTGT-CAA 948 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| |||||||||||| || || ||||| || || ||| | Sbjct 949 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATT 1008 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 ||| | ||||| | | ||| | |||||||| || || || || ||||||| Sbjct 1009 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 1068 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 | | || || ||||||||||| |||| || |||| |||||| || |||| Sbjct 1069 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 1128 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 |||| || || ||||| || || | ||||| |||| |||| || | | || | Sbjct 1129 TGAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCG-ATCTCT 1187 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || ||| || || | ||||| || ||||||||||| | ||| || || |||||||| Sbjct 1188 TTTAAGCTATCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGA 1247 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | ||||| || | || | || |||| || | || ||| |||||||| || Sbjct 1248 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGGTAGACACCCCATTCT 1307 Query 7325 ACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 1308 ACGAAGTAGGCGCCCACAAC 1327 >seq153336 Length=250 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || ||||||| || |||||||| ||||| ||||| |||| ||| | || Sbjct 21 AACACTAAGTGCAAAGTAGATTCCTTCTGGATGTTATAGTCCGACAGTGTGCGCCCATCT 80 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| ||||||||||| ||||| | |||||||| ||||| | || |||||||| Sbjct 81 TCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCT 140 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| |||||| | | | || | | ||||| || | ||||| || Sbjct 141 TGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTCCACTTCTAAAGTAATAGTT 200 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || ||||| |||||||| Sbjct 201 TTTCCAGTTAGTGTTTTTACAAAAATTTGCAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393521049968254