Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq21365 196 4e-45 seq117972 109 4e-19 seq218964 105 5e-18 seq2512 93.3 3e-14 >seq21365 Length=2821 Score = 196 bits (216), Expect = 4e-45 Identities = 776/1198 (65%), Gaps = 45/1198 (4%) Strand=Plus/Plus Query 90774 GTTCATTGTGTTGAGCAGATCACCATTATCGGCGTCAATTTCCCATGCAAACAATCCACC 90833 |||||| | || || |||||||| || |||||||| |||||||| ||||| | ||||| Sbjct 143 GTTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAAGCAAAGAGACCACC 202 Query 90834 CAACTTGTT-TTGATCAACGTATCTGCTTTTAGCCAAAACGGAATCAACGCTGTCAAACG 90892 | ||||| || ||| | ||| | | || | | ||| || | | ||||| | | Sbjct 203 TAGTTTGTTATTTCTCA-CATATTTACCCTTTTCAATAACTGATCTAGCATTGTCATAGG 261 Query 90893 TGATAAGGTCGGCTTTATTTTTGT-TAAAAACATATGATGCTTCGGCAACTTTGTCAAAC 90951 | | |||||| | | | | || | || ||||| | |||| ||| || ||||| | Sbjct 262 TTACAAGGTCTCCAGT-TGATGGTCTGAAGACATAAGGAGCTTGGGCGACATTGTCGTAA 320 Query 90952 TTGTACACGTACTCG--TTTAT-ATTTTCTTTT---ATTTGGCGATAGTCAACGACTCCA 91005 | | | ||| | || | | |||| || || | | || ||||| ||||| Sbjct 321 TGAAATTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCTCTGTAATCAACCACTCCG 380 Query 91006 TCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCA-TCAA---AATAGTTATCACC 91061 |||| ||| || || | || || || ||||| || | || ||| ||| || Sbjct 381 TCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAAT-GTTGTC--- 436 Query 91062 TTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTT 91121 || ||||||| ||||| ||||| || || || |||||||| ||||| | | || || Sbjct 437 TTCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTAATACAATCTT 496 Query 91122 ACTAGAATCAACACCTTGTTTTGTGAGCA-----TTTGCACGGCATGATGCGTGGTGTAC 91176 ||| || || || ||| | | || ||| | | | | | | ||||| Sbjct 497 CTTAGGATTCACTCCCTGT---GCCAACAAGTATTTTACTCCGAAG--TCAGATGTGTAA 551 Query 91177 AACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAA----ATCGGT 91232 || || || |||||| || ||||| | || ||||||| | |||| ||| Sbjct 552 GTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATC--- 607 Query 91233 ATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTG 91292 ||||||||| ||||| || || || ||| |||| | | || | | || | | ||||| Sbjct 608 ATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTG 667 Query 91293 TGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAA 91352 || | | || || |||| || ||| || || | || | | || || ||||| Sbjct 668 AGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTCAA 727 Query 91353 TTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTTAG 91412 |||||| || || | | ||| | ||||| | ||| ||||| || ||||| | Sbjct 728 TTCGTATTTCTTGCCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCAT 787 Query 91413 CAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTT 91472 |||| | || | || | || | | || | || | | | || ||||| ||||| Sbjct 788 CAAACTTACATAACAATCACCATCT--TCTGGGCTA-CCGAGGTCAGGGTTAGCACCTTT 844 Query 91473 ACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAA 91532 ||| || ||||| |||||||| ||||||||||| || || |||||||| | | | ||| Sbjct 845 ACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGAAA 904 Query 91533 TTCTTTAACCGAATCAACGAA-CACGTT-TCTTCG-TTTGACATCGTGCATAAAATAGAA 91589 || || || || | || || | ||| | || | |||| || | | ||| |||| Sbjct 905 CTCCTTTACTGACTGCACAAATCGTGTTCTTTTAGATTTGTCAACT---AAAAAGAAGAA 961 Query 91590 CGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAA 91649 || || | | ||||| ||||| || || || | || || || | ||| ||| Sbjct 962 AGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCGGGCTTG 1021 Query 91650 CTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACC 91709 || | ||||| || ||||||||||| ||||| ||||||||||| | || | || Sbjct 1022 TTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCC 1081 Query 91710 TTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCG 91769 ||||||||||||||||| |||||||| |||||||| || || ||||| || || || || Sbjct 1082 TTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACG 1141 Query 91770 TCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTT 91829 || | || || ||||||| || ||||| || || ||| | | ||| || Sbjct 1142 GCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTATCATT 1201 Query 91830 TAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGCAG 91889 || || || || ||||||||||| ||||| || || | || ||| | | ||| || | Sbjct 1202 TATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTAT 1261 Query 91890 CGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGCG 91947 || | || | || || || | ||| || |||||||| || ||||| ||| Sbjct 1262 AGGTATACGATCCACGGGGAATTTCCTAGGGTAGACACCCCATTCTACGAAGTAGGCG 1319 >seq117972 Length=685 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || | || ||||||||||| ||||||||||| | | ||| || ||| Sbjct 288 AAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATC 347 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||| |||||||| | ||||| | ||||||||| || | |||||| || || Sbjct 348 TTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTC 407 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| ||| || | | ||| |||||| || || ||| | || || | Sbjct 408 TTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAAAGTAATTGT 467 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| || | |||||| |||||||||||||| Sbjct 468 TTTGCCAGTAAGTGTTTTAACAAAAATTTGCAT 500 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | | ||||| ||||| || |||||||||||||||||||| |||| Sbjct 45 TCCACCACGAAGACGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGA 104 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||||||||| || || ||| ||||||| | || ||||| || Sbjct 105 AAGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGG 164 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| || || || |||| | || || || | | ||| ||| ||| ||| || Sbjct 165 GATGCCCTCTTTGTCTTGGATTT-TAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 223 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| | || || || | ||||| |||||||| |||||| Sbjct 224 CTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATT 273 >seq218964 Length=932 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||| | | ||||| |||||| || ||||||||||||||||||||||| | Sbjct 867 TCCACCACGTAGACGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGA 808 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||||| || || || | || | | ||||||||| || Sbjct 807 AAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 748 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || ||||| | || || || | | ||| |||||| || || Sbjct 747 AATGCCTTCCTTGTCTTGAATTT-TCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAA 689 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | || ||| |||| || || | |||||| || ||||| |||||||| Sbjct 688 CTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTT 637 >seq2512 Length=3386 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 20082 CGCACGCTTTATTCACAACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATC 20141 ||||||| | | || || || || ||||| || || || || || ||| | | ||| Sbjct 968 CGCACGCCTCCGTGACCACCTTCTGTACATAGTCTCGGCCCTTTACCAGCTGGACGTAAG 1027 Query 20142 CACAGTTACTAAACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTT 20201 | || ||||| || ||||| || ||||| || | ||| || || ||||| || | Sbjct 1028 CGCATCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCT 1087 Query 20202 TAAGGCCGCCATTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATC 20261 | || ||||| | || || || ||| |||||| || || | || || | |||| Sbjct 1088 TGAGCCCGCCGTCACAGTAGAAGCACTTAGTTTTGTCGCCCTGGCCGGTGTAGAAGAATC 1147 Query 20262 CCGCTTCGGCCAATTCATCGGGCCTTTGCTTCATGCTGCGCGGCCA 20307 |||| ||||| | ||| ||||| | |||||||||||||| ||||| Sbjct 1148 CCGCCTCGGCGAGTTCCTCGGGTTTCTGCTTCATGCTGCGGGGCCA 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377851733490630