Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25]
322,774 sequences; 210,868,349 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 645 3e-180
seq218964 136 4e-27
seq197295 132 4e-26
seq117972 109 5e-19
seq213871 95.1 1e-14
seq156627 89.7 5e-13
>seq5177
Length=4331
Score = 645 bits (714), Expect = 3e-180
Identities = 1228/1791 (69%), Gaps = 44/1791 (2%)
Strand=Plus/Minus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
||||| || |||||||| || || ||||| || ||||| ||||| | || ||||| ||
Sbjct 3766 TTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCT 3707
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224
|| || | |||||||||||| |||| ||||| |||||||| | ||| ||||| | ||
Sbjct 3706 GTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAGGT 3647
Query 22225 ----CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280
||| |||||| || || || ||||| || || ||||| ||||||| ||| |
Sbjct 3646 TTAGCAA---CATGTATG--TTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTATCAG 3592
Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340
| ||||| | ||| |||| || || || ||||||||||| ||||||| | || |
Sbjct 3591 CCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTA 3532
Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400
| ||| || || ||| || || | || || || |||| ||| || | |||||
Sbjct 3531 TTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTT 3472
Query 22401 TAATCGTATCGTTCCACAAACCGATGGCG-GTCAAATCTTTGACCAGATGACGGTTCACC 22459
| || || | ||| ||| | | || |||||||| | | |||||| |||||||
Sbjct 3471 TCATATCTTCATCCCATAAATC-AGCTCGAGTCAAATCAGTCAGAAGATGATGGTTCACT 3413
Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519
|| |||| || || || || || | | ||||||||| || ||||| || ||||| |||
Sbjct 3412 ACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTTCAAAA 3353
Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579
|||||| |||| || || || || || || || || |||||||| || || | || |||
Sbjct 3352 GATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCAATAGA 3293
Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAAT-TTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638
|| || | ||| || || |||| || ||| || ||||| | | ||||||||| || ||
Sbjct 3292 GAATTACGCAAACCATGTTTTGCTATCTTTTCT-TTGAGGACAGCCCAGTCCCAAAGGTC 3234
Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698
| || || |||| ||||||||| || || | | || | || || || || ||
Sbjct 3233 TGTAGGAGTT---TTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTCC 3177
Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758
|| || || ||| | ||| | | | | || | ||| || || || || || || ||
Sbjct 3176 TTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACC 3117
Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG----GCGGCGACGCTTTCGT 22814
||||| || || || || |||| ||| | || || | || | |||||||
Sbjct 3116 ATAATAAATTGTTTCAAATATTTG-TTGATTAA---GGAGTATTGCTTTCTCACTTTCGT 3061
Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874
| || || | ||||| ||| || | || |||||||||||||| || |||||||| || |
Sbjct 3060 AAGGTATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGAC 3001
Query 22875 GGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTC 22934
||| ||| ||| || |||||| || || | |||||| | || ||| || |
Sbjct 3000 GGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 2941
Query 22935 TGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC 22994
|||| || ||| |||||||| || || || | ||| ||||
Sbjct 2940 TGTTTAAATTTTGAGTCACAATCTTAGTGATTTCTTTTAATTTTTTAAA--ACTAAA--- 2886
Query 22995 CCGAT--TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTC 23052
|||| | | |||||||| |||| | || || || ||||| ||||| || ||||| ||
Sbjct 2885 TCGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 2826
Query 23053 GTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAA 23112
|||| || ||||| | |||| || || || ||||||||||| || || ||||| |
Sbjct 2825 ATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAG 2766
Query 23113 ATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGT 23172
||| | || || || |||| ||||| | |||||| || | ||| || || || || ||
Sbjct 2765 ATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCAGT 2706
Query 23173 CTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC-TGAGCGTGAACACGTCGCACGT 23231
||| || || | || || || | ||| | | || ||||| || ||| |
Sbjct 2705 CTCCACTTGAGCTTCTATAATAGACTTCCATA-ACTCTTGAGCTCTGACTCGTTTTATAA 2647
Query 23232 ACCTGCCTTCTTCCTCGTACTTTTGG--TACAACGCGTCAAATTCGGCACCGTAACAGTC 23289
||| |||||| || || ||||| || | || || ||||| | |||||||||||
Sbjct 2646 ACCGTTTTTCTTCTTCATA--TTTGGCATATAGGGCTTCGAATTCCTCTCCGTAACAGTC 2589
Query 23290 GGCCAGGCCGGGCGATTGCAT-CGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348
|| ||||| || | | ||| ||||||||||||||||| | || ||||| || |
Sbjct 2588 AGCGAGGCCAGGACAAT-CATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACCC 2530
Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408
| ||||||| ||||| |||||||||| ||| || |||||||| | || | || || |
Sbjct 2529 TTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTT 2470
Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468
| || || ||||||||||| ||||| || || || || | |||||||||||| ||||| |
Sbjct 2469 CCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTA 2410
Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528
||||| ||||| || || || | || || || || ||||| || || | ||| || |
Sbjct 2409 AGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTAT 2350
Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588
||||||||||||| | ||| ||||| ||||| || || | || ||| || | |
Sbjct 2349 TGTTGTACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTATAT 2290
Query 23589 TCGAACCTTTTGCTCGAA--CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646
|| || | |||| || | |||| | || ||||||||||| ||| | ||||| ||
Sbjct 2289 AAGACCCCTGGGCTCTAATGCAATGTGTA--TGTAAACCTATGCCACCGGCAGATTTAGA 2232
Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGC 23706
|| | || |||||||| | ||| ||| | || || || ||||| || ||||| | ||
Sbjct 2231 AATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCATAGC 2172
Query 23707 GACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766
| | ||| || || || | || | || ||||| || ||||||||||| |||||
Sbjct 2171 TATAAGGAAGCAGGAGGAAAGCTGTGGCCGCGGTGTAGCAGCTGAGAACAGTGTAGGGCT 2112
Query 23767 GGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826
|| || ||||| ||| | ||||| | ||| || || | ||| || |||||||||
Sbjct 2111 TGCATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTC 2052
Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877
|| || || || || |||| ||| | ||| | ||||| ||||||||| ||
Sbjct 2051 TTCACCATGAATCCCTATGGAGACTCTCATAAGCATGTGTTGAGGTCTTTC 2001
>seq218964
Length=932
Score = 136 bits (150), Expect = 4e-27
Identities = 161/217 (74%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245
|||||| ||||| |||||||| || || || || || ||||| || || | || |||||
Sbjct 634 ATCAAA-ATGCAGATTTTCGTGAAAACACTCACGGGTAAAACCATTACTTTGGAAGTTGA 692
Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305
||| ||||||| | | |||| || ||| || ||| |||||||||||| | || ||
Sbjct 693 ACCTTCCGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCCTCC 752
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365
|| || || ||| | || |||||||| || || ||||||||| ||| | ||
Sbjct 753 AGATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCAGA 812
Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402
|| ||||||||||||||||| |||||||| ||||||
Sbjct 813 CTACAACATTCAAAAAGAATCTACTCTTCACCTGGTA 849
>seq197295
Length=1118
Score = 132 bits (146), Expect = 4e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 57645 GATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTC 57704
|||||||| | | ||||| | |||| | ||||||| ||||| || || || || ||
Sbjct 522 GATTGGGAGACATTAAAAGATTGCGAGAAACATTTTATCAAACATGTCTTAGCATTCTTT 581
Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA 57764
|| || || |||||||||||||| ||||| ||||| || | || || ||||| || |||
Sbjct 582 GCGGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCTCGCAAGAGGTTCAA 641
Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824
||||| || || || ||||| || || |||||| | || || ||||| || ||||| ||
Sbjct 642 GTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATGTTCATTCGGAG 701
Query 57825 ATGTATTCGCTACTCATCGATACGTA 57850
||||| || || | || || || ||
Sbjct 702 ATGTACTCTTTATTAATTGACACTTA 727
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/131 (77%), Gaps = 6/131 (5%)
Strand=Plus/Plus
Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGA---TTTGTCATGTTTCCGATTGAATATCC 57565
||| || || ||| |||||| ||| |||| || || || || || || |||||||
Sbjct 268 TGAGCCTCTGTTG--AGAGAAAACCC-TAGACGTTTCGTTATATTCCCAATCCAATATCC 324
Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625
||||| ||| | ||||| ||||| || ||||||||||||||||| | |||||||||||
Sbjct 325 CGACATATGGCAGATGTATAAAAAAGCTGAAGCATCGTTTTGGACTGCAGAAGAAGTAGA 384
Query 57626 CCTGTCTAAGG 57636
| | |||||||
Sbjct 385 CTTATCTAAGG 395
>seq117972
Length=685
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || || || || || || || || || || | || || ||||| ||
Sbjct 272 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 213
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | |||| || ||| | ||| ||||| || ||| | || || || |||
Sbjct 212 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 153
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || ||||| || || |||||||| | ||| | |||||| |||
Sbjct 152 CAGCGCCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCCGATTACAAC 93
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402
|||||||||||||| ||||||||| |||||
Sbjct 92 ATTCAAAAAGAATCTACTCTTCATTTGGTA 63
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || || || |||||||| || || | || |||||| | ||
Sbjct 500 ATGCAAATTTTTGTTAAAACACTTACTGGCAAAACAATTACTTTAGAAGTTGAAGCCTCT 441
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| || || | ||| ||||| |||||| | || || || ||
Sbjct 440 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 381
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || ||||| ||||| || |||||||| | || | || || |||
Sbjct 380 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAAC 321
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| ||||||||||| ||| | ||| | ||||||
Sbjct 320 ATCCAAAAAGAATCTACTTTGCATTTAGTACTT 288
>seq213871
Length=423
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974
||||||||||| ||| | | | ||||| ||| || ||||| || | || |
Sbjct 168 AAGAAGGCAGACTGGGCGTTACAGTGGATCGGCAGCAAGACTGCCACATTTGGAGAACGT 227
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
| ||||| || || || || || || ||||| || || ||||||||||| ||||||||
Sbjct 228 ATTATCGCTTTTGCGGCGGTTGAGGGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTT 287
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081
||| |||| ||||| ||| |||||||||| | || || ||||| ||
Sbjct 288 TGGTTGAAAAAACGAGGCTTGATGCCCGGATTAACTTTCAGCAATGA 334
>seq156627
Length=1589
Score = 89.7 bits (98), Expect = 5e-13
Identities = 117/159 (74%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379
|| ||| |||| | ||||| || |||||||||||||| ||||| | || ||||| |||
Sbjct 368 CACTACCACACACAGAATCCATTCGATTTTATGAATCTCATCTCATTGGAAGGCAAAACA 427
Query 58380 AACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439
||||| || || || |||||| | ||||| ||||| | || |||||| ||| |||
Sbjct 428 AACTTCTTTGAGAAGAAAGTTGGAGAATACCAAAAGTGGGGAGTGATG-GCG----CAAC 482
Query 58440 TTGGAGGACGATATTTTCACTTTGGATGCTGCCTTTTAA 58478
| |||| || | || ||||| ||||| | ||||||
Sbjct 483 CT-ATGGACAATGTGTTTACTTTAGATGCAGAATTTTAA 520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443967877450080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |