Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5177 517 1e-141 seq197295 95.1 2e-14 >seq5177 Length=4331 Score = 517 bits (572), Expect = 1e-141 Identities = 1105/1628 (68%), Gaps = 57/1628 (4%) Strand=Plus/Minus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 3775 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 3716 Query 62088 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62147 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 3715 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 3656 Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 3655 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 3596 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCG 62266 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 3595 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 3536 Query 62267 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTACCATAATCCT 62323 ||| || |||| || | ||| | ||| || || |||||| | ||||| Sbjct 3535 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 3477 Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGGT 62382 ||| || || || |||| |||||| | |||| || ||| | | || ||||| ||| Sbjct 3476 ATTTTTCATATCTTCATCCCATAA-ATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGT 3418 Query 62383 TAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62442 | ||||| | ||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 3417 TCACTACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 3358 Query 62443 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62502 | | || ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 3357 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 3298 Query 62503 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCA 62560 ||| | ||| | | ||| ||||| || || || ||||| || |||| | ||| Sbjct 3297 ATAGAGAATTACGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTCCCA 3240 Query 62561 AAGATCCGACG-------GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGG 62613 ||| || | | || | ||| ||| || || ||||| | || | Sbjct 3239 AAGGTCTGTAGGAGTTTTGTTCCACA-------TATCATACTGGAGGATACCTTGGCTAG 3187 Query 62614 C-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 | | || |||| |||||| |||| ||||| || || |||| || |||||| || Sbjct 3186 CTGGAC-TTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCT 3128 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGG 62732 ||||||||||| |||||||| |||||||| || | | ||| || | ||||| | Sbjct 3127 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCA 3068 Query 62733 CTATCAAATGGATAAT-TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 || || | || || | | | | | ||| | || || | || |||||||||||||| Sbjct 3067 CTTTCGTAAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACC 3009 Query 62792 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62851 |||||| | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| Sbjct 3008 GATAGGACGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATC 2949 Query 62852 TATAATTTTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62908 || | ||| || | |||| | ||||| ||| | | || || | ||| ||| Sbjct 2948 AATGACTTTGTTTAAATTTTGAGTCACAAT--CTTAG-TGATTTCTTTTAATTTTTTAAA 2892 Query 62909 ATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGC 62968 | |||||| || | ||||||||||| | ||| | || || || || ||||| || Sbjct 2891 ACTAAATCGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGC 2832 Query 62969 TACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 || |||| | || | | ||||| | | ||||||||||||||| ||||| || || Sbjct 2831 CACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAAT 2775 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 ||| || | ||||| ||||||||||||| |||| || ||||||||||| | || |||| Sbjct 2774 AGTGCCAAGATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGG 2715 Query 63086 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 63145 |||||||| || | |||| ||||||||| | ||||| | || |||| | | | Sbjct 2714 TGTACCAGTCTCCACTTGAGCTTCTATAATAGACTTCCATAACTCTTGAGCTCTGA--CT 2657 Query 63146 AGATTTGTATCTCCTTTCTCT--TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 | ||| || | ||| ||| ||| ||| | ||| | |||||| || ||||| Sbjct 2656 CGTTTTATAAACCGTTTTTCTTCTTCATATTTGGCATATAGGGCTTCGAATTCCTCTCCG 2597 Query 63204 CAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 || | | | | |||||| |||| |||||||| | ||| ||| |||||| Sbjct 2596 TAACAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCC 2540 Query 63264 TT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTT 63320 || || | ||||||||| ||||| || ||||| | ||| ||| || ||||| | | Sbjct 2539 TTTTCTACCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCT 2480 Query 63321 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63380 || ||| || || ||||| |||||||| | ||| | |||| | | || || | |||| Sbjct 2479 CTCATTTCTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGC 2420 Query 63381 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63440 || || || ||||| || || | | || || ||||||||||| || ||||||| ||| Sbjct 2419 CAAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATAT 2360 Query 63441 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63500 || || || || || || |||||||||||||| | | ||| || || | ||||| || Sbjct 2359 CTGGCAGTATTGTTGTACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTG 2300 Query 63501 CCGGAGATATAGCCTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCT 63557 || | ||||| || ||| | ||| || || || || |||||| || || Sbjct 2299 CCAGCTATATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCG 2243 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || |||||| |||||||| ||| ||||||| || || | || ||||| |||||||| Sbjct 2242 GCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCG 2183 Query 63618 TCGATCAT 63625 || |||| Sbjct 2182 TCTTTCAT 2175 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 1677 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 1618 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 1617 TTAAAATCTCTATCATAAACAAT 1595 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 1022 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 963 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 962 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 903 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 902 GTTACACCAGAATATATGCC 883 >seq197295 Length=1118 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 393 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 334 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || ||||| |||||||||||||||| ||||| || Sbjct 333 CATATGTCGGGATATTGGATTGGGAATATAACGAA 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627276490674720