Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5177 500 1e-136 seq197295 86.0 8e-12 >seq5177 Length=4331 Score = 500 bits (554), Expect = 1e-136 Identities = 1096/1621 (68%), Gaps = 43/1621 (3%) Strand=Plus/Minus Query 64821 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 64880 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 3775 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 3716 Query 64881 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 64940 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 3715 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 3656 Query 64941 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 65000 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 3655 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 3596 Query 65001 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 65059 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 3595 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 3536 Query 65060 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 65116 ||| || |||| || | ||| | ||| || || |||||| | ||||| Sbjct 3535 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 3477 Query 65117 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 65175 ||| || || || |||| |||||| | |||| || ||| | | || ||||| | | Sbjct 3476 ATTTTTCATATCTTCATCCCATAA-ATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGT 3418 Query 65176 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 65235 | ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 3417 TCACTACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 3358 Query 65236 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 | | ||| ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 3357 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 3298 Query 65296 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 65353 ||| | ||| | | ||| ||||| || || || ||||| || |||| | ||| Sbjct 3297 ATAGAGAATTACGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTCCCA 3240 Query 65354 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 65412 ||| || | || || || ||||| | || || | || Sbjct 3239 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC- 3181 Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 |||| |||||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 3180 TTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 3121 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 |||| |||||||| ||||| || || | | ||| || | ||||| | || || Sbjct 3120 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 3061 Query 65533 ATGGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 | || || | | | | | ||| | ||||| | || |||||||||||||||||||| Sbjct 3060 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGA 3002 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 3001 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 2942 Query 65652 TTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 65708 || || | |||| | ||||| ||| | | || || | ||| |||| |||| Sbjct 2941 TTGTTTAAATTTTGAGTCACAAT--CTTAG-TGATTTCTTTTAATTTTTTAAAACTAAAT 2885 Query 65709 CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 65768 || | || | ||||||||||| | ||| | || || || || || || || || ||| Sbjct 2884 CGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCA 2825 Query 65769 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 2824 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 2768 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 | ||||| ||||||||||||| |||| || ||||||||||| | || |||| |||||| Sbjct 2767 AGATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCA 2708 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 65945 || || | |||| ||||||||| | ||||| | || |||| | | | | ||| Sbjct 2707 GTCTCCACTTGAGCTTCTATAATAGACTTCCATAACTCTTGAGCTCTGA--CTCGTTTTA 2650 Query 65946 T--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 66003 | | | |||||| ||| ||| | ||| | |||||| || ||||| || | Sbjct 2649 TAAACCGTTTTTCTTCTTCATATTTGGCATATAGGGCTTCGAATTCCTCTCCGTAACAGT 2590 Query 66004 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CA 66060 | | |||||||| |||| |||||||| | ||| ||| |||||||| | Sbjct 2589 CAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTA 2533 Query 66061 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTT 66120 | | ||||||||| ||||| || ||||| | ||| ||| | ||||| | ||| || Sbjct 2532 CCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 2473 Query 66121 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTT 66180 | || || ||||| |||||||| | ||| | |||| | | || || |||||| || | Sbjct 2472 CTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCT 2413 Query 66181 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 66240 | ||||| || || | | || || ||||||||||| || ||||||| ||||| || | Sbjct 2412 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 2353 Query 66241 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 66300 | || || || |||||||||||||| | | |||||| || ||||| || || | | Sbjct 2352 TATTGTTGTACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTA 2293 Query 66301 TATAGCTTCCACTTGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTT 66357 |||| || || | ||| || || || || |||||| || || || || Sbjct 2292 TATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATT 2236 Query 66358 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 66417 |||| |||||||| ||| ||||||| ||||| | || || || || ||||| || ||| Sbjct 2235 TAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCA 2176 Query 66418 T 66418 | Sbjct 2175 T 2175 Score = 105 bits (116), Expect = 9e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||| |||||||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 1678 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 1619 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 1618 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 1568 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 1022 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 963 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 962 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 903 Query 66930 GTTACTCCATTATATATTCC 66949 ||||| ||| |||||| || Sbjct 902 GTTACACCAGAATATATGCC 883 >seq197295 Length=1118 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 393 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 334 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || ||||| ||||||| ||||| || ||||| || Sbjct 333 CATATGTCGGGATATTGGATTGGGAATATAACGAA 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655517286658160