Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21365 190 2e-43 seq117972 116 4e-21 seq218964 111 2e-19 seq42689 82.4 8e-11 >seq21365 Length=2821 Score = 190 bits (210), Expect = 2e-43 Identities = 760/1171 (65%), Gaps = 44/1171 (4%) Strand=Plus/Plus Query 20330 CAATCTGCCGGTAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCG 20389 |||||| | |||||| ||||| ||||||| |||||| || ||| || || || || Sbjct 355 CAATCTCTCTGTAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGT 414 Query 20390 TGCCCGCGAAAGGATTATCACTATCGC--TCTTCA-CACCGGTCCAACCGCGCCCGTACA 20446 |||| | ||| ||| | | ||| || | | | || |||||||| || || |||| Sbjct 415 TGCCTGTGAAGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACA 474 Query 20447 TTGCTACACCCAGTGCAATTTTACTT----TTTGGTACGTGTTGCGCGAGCAACGCTTCT 20502 | || ||||| | | |||| || ||| || | | ||| || | ||| || | Sbjct 475 TGGCAACACCTAATACAATCTT-CTTAGGATTCACTCCCTGT---GCCAACAAGTATTTT 530 Query 20503 ACGGCACGATCTGCGCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTT 20562 || | || | |||| ||| | ||| ||||| || || || |||||| ||| Sbjct 531 ACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTT 590 Query 20563 TGATGTCCCAGATCCGTAGTGGACCAGGCTCCTTTGAAATCGTACGACATTAAGAATATG 20622 |||||||| ||| | | ||||||||||| ||||| || || ||| ||||| || Sbjct 591 TGATGTCCAAGAGTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATA 650 Query 20623 GTATCGAGGTATTTTTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCG 20682 ||| | || ||||| || | | ||| || || || || ||||| || | | Sbjct 651 TGATCCATATAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAG 710 Query 20683 CTTATCGCGCTCGTCAACAGATAGTAACGATTGTGATGTAT-GCCGAGGGCG--TCGAGC 20739 || || || ||||| | ||| ||| || | || ||| || |||||| Sbjct 711 CTAATAGCAGAAGTCAAT---TCGTATTTCTTGCCATTCTTAGCTGAGAGCTCATCGAGC 767 Query 20740 ATGCCGCGAAGTTCACGCAGCAGGATCGTGTACGTGGCTCGATCGCGTTCGGCGTCGCCG 20799 || | || | ||| || || | || | | ||| ||| | | ||| Sbjct 768 ATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCG 824 Query 20800 ACATTGGGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAG 20859 | | ||||| || || || || || |||||||||||||| || || || ||||| ||| Sbjct 825 AGGTCAGGGTTAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAG 884 Query 20860 AATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTTTGGCGCACGATCTT 20918 |||||||| ||| ||| |||| | || || | | ||| ||| | ||| || Sbjct 885 AATTTCCATGTTAGGAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTTTTAGAT-TT 943 Query 20919 GTCGTGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTT 20978 ||| | | ||| || || || | ||| ||||| || || || || || | | || Sbjct 944 GTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTT 1003 Query 20979 GAGATGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTC 21038 | | ||| || ||| | ||| | ||||||||||||||||||||| || || Sbjct 1004 CAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTC 1063 Query 21039 GTTCCATGCGCTGACA--CCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATG 21096 ||||||| | |||| ||||| || ||||| |||| || ||||| |||||||| || Sbjct 1064 GTTCCAT--GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATT 1121 Query 21097 GCCACCTTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGG 21156 | || || ||||| ||||||| || || ||||||| |||| ||||||||| | Sbjct 1122 GAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCG 1181 Query 21157 A-CACTTTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAA 21215 | | ||||| ||| ||| || ||||| || || ||||| ||||| | || || || | Sbjct 1182 ATCTCTTTTAAGC-TATCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAG 1240 Query 21216 CAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACC 21275 |||||| | | || ||| | || | ||| ||||| || | | || || ||||| Sbjct 1241 CAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGGTAGACACC 1300 Query 21276 CCATTCGACAAAGTATGCTCCAATGATCTTGTCCGAGCGCTTT--TCGAAACGTTTATTG 21333 |||||| || ||||| || || | | ||| ||| || ||| | ||| ||||||| Sbjct 1301 CCATTCTACGAAGTAGGCGCCCA-CAACTTTTCC-AGATGTTTGCTTGAATGGTTTATTT 1358 Query 21334 TTTTCGAGATAATCGTAGA--CGAGCGGCGCGAGATGCGAGCCGTCCGTGTCGGCCACGA 21391 ||||| ||| ||| | | | || | ||| || || || |||||||||| Sbjct 1359 TTTTC-TCCCAAT-GTATATTCCAAAGGAAGTAAATGACTTCCATCAGTATCGGCCACGA 1416 Query 21392 CGACTTTAACCGGTGCGCTAG-TCGAA---CAGCCGTCGACGTTGCACAGTTTCACAGTC 21447 | | || ||||| | | | | ||| |||||||| | ||||| |||| ||| ||| Sbjct 1417 CAATTT----CGGTGGGATCGCTTGAACTGCAGCCGTCTTCATTGCAAAGTTCCACTGTC 1472 Query 21448 ATATCGTACTTGCCGCCCTTAGTAACGGGAA 21478 || | ||| | || || || | |||| ||| Sbjct 1473 ATTTGGTATCTTCCACCTTTCGAAACGCGAA 1503 >seq117972 Length=685 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || |||| ||||| |||||||||||||| |||||| Sbjct 46 CCACCACGAAGACGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAA 105 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | || ||||||||| |||| || || |||||||| || || Sbjct 106 AGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGGG 165 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| |||||| ||||| | ||| | || || | ||| ||||| Sbjct 166 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 225 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||| || || || ||||| Sbjct 226 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 272 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | ||||| || | ||||| |||||||| ||||| || || Sbjct 274 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 333 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | || || || || | || |||||||| ||||| ||||| Sbjct 334 AGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 393 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| |||| | ||| | |||||| | || || || Sbjct 394 ATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 453 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| || | ||||| || || ||||||||| Sbjct 454 TCTAAAGTAATTGTTTTGCCAGTAAGTGTTTTAACAAAAATTTGCATA 501 >seq218964 Length=932 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || | ||||| ||||| |||||||||||||| || || Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGAA 807 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || || ||||| | |||| |||||| ||||| ||||| Sbjct 806 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 747 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| | ||||| | ||| | ||||||| || || || Sbjct 746 ATGCCTTCCTTGTC-TTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAAC 688 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || | ||||| ||||| || ||||| Sbjct 687 TTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCAT 640 >seq42689 Length=544 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || || ||||||||||| || || || ||| | || | ||||| ||||||||||| Sbjct 124 GTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCA-TCTTCTAGCTGTTTACC 66 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| ||||||||| || || || || ||||| || || |||||| ||| Sbjct 65 AGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTT 6 Query 139687 TA 139688 || Sbjct 5 TA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494062542980800