Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21365 206 2e-48 seq2512 102 7e-17 seq117972 91.5 1e-13 seq218964 82.4 6e-11 >seq21365 Length=2821 Score = 206 bits (228), Expect = 2e-48 Identities = 742/1135 (65%), Gaps = 43/1135 (4%) Strand=Plus/Plus Query 100112 TTCATAGCATTTAACAAGTCGCCGTTGTCGGCGTCGATTTCCCAAGCGAATAACCCGCCC 100171 ||||| ||||| | | || |||||||||||||||||||||||||| || | || || Sbjct 144 TTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAAGCAAAGAGACCACCT 203 Query 100172 AATCCGTTTTGATCT-ACATAACTATTTTTTGCTAATACAGAATCGA-CACTGTCAAAAG 100229 | | ||| | ||| ||||| || ||| | | || || || | || ||||| | | Sbjct 204 AGTTTGTTATT-TCTCACATATTTACCCTTTTCAATAACTGA-TCTAGCATTGTCATAGG 261 Query 100230 AGATTAAATCGCCCTTGTCTTTGT-TAAAAACGTAAGCCGCTTTAGCGAC-----CG-AA 100282 | | || || | | | || | || || |||| |||| ||||| || || Sbjct 262 TTACAAGGTCTCCAGT-TGATGGTCTGAAGACATAAGGAGCTTGGGCGACATTGTCGTAA 320 Query 100283 TCAAATTTGTAAATGTACTTGTTCAATT-CGTTTTCAATTTGGCGATAATCGACAACGCC 100341 | ||||| | || |||| ||||| | || |||| | | ||||| || || || Sbjct 321 TGAAATTCCCACTTGC-CTTGAGCAATTTCATTCGCAATCTCTCTGTAATCAACCACTCC 379 Query 100342 GTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA---ATAGTTGTCACC 100398 ||||| |||||| || | || || || | ||| |||||||||| | |||||| | Sbjct 380 GTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 439 Query 100399 GTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTT 100458 || || | ||||| |||||||| || || ||||||||||| || | | ||| || Sbjct 440 GTAAT---CATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTAATACAATCTT 496 Query 100459 GCGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTC 100518 || | ||| ||||| | | |||| || || || | |||| || Sbjct 497 CTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTC 556 Query 100519 GTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTG 100574 || || ||||| |||||||| | | ||||| | | |||| ||| |||| Sbjct 557 CTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCA---TTTG 612 Query 100575 ACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCA 100633 ||||||| || || || || || ||||| |||||| || | ||| | | ||||| || Sbjct 613 ACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAA-ATATGATCCATATAATTTTGAGCC 671 Query 100634 ACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCG 100693 | |||| | || || ||||| || | || || || || || ||||| ||| Sbjct 672 TTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTCAATTCG 731 Query 100694 TACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAA 100752 || | ||||| | | || || |||| || |||||| | || ||||| |||| || Sbjct 732 TATTTCTTGCCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCATCAA 790 Query 100753 AATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGC 100811 | | || || | || || | | || || ||| ||||| || ||||| | Sbjct 791 ACTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTAC 846 Query 100812 CGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATT 100871 | || ||||||||||| || || || || || || || || ||||| | | ||| | Sbjct 847 CACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGAAACT 906 Query 100872 CCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAAC---G 100928 |||| || || | |||||| || | ||| | | || | ||| |||| | Sbjct 907 CCTTTACTGACTGCACAAAT---CGTGTTCTTTTAGATTTGTCAACTAAAAAGAAGAAAG 963 Query 100929 GGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCT 100988 | |||| | |||||| || || || || || ||||| || | | || ||| | | Sbjct 964 GATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTT 1023 Query 100989 TGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCT 101048 | | ||||| || || || ||||| ||||| ||||||||||||| |||| || | Sbjct 1024 TTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTT 1083 Query 101049 TTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGAC 101108 |||| |||||||||| ||| ||||| |||||||| || | ||||||||| || ||| | Sbjct 1084 TTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGC 1143 Query 101109 CCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGA 101168 | | ||||| || ||||| |||| |||||||| || ||| | | || || | Sbjct 1144 CGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTATCATTTA 1203 Query 101169 GGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGG 101223 |||||| |||||||||||||| || || || || | || ||| | ||||| || Sbjct 1204 TGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGG 1258 >seq2512 Length=3386 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| ||| || || ||| || ||||||||||| Sbjct 1366 CGCAGGAAGGGGCACTGGGGCGCCCACCGTTGGTGGTCCTTAGCGGGATCGTCGCCCGCG 1425 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| || ||||| |||| | Sbjct 1426 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCACCGCGGCCCAGG 1485 Query 25350 TAGTAGAACCCATT 25363 || ||||| || || Sbjct 1486 TAATAGAAGCCGTT 1499 >seq117972 Length=685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || |||||||| |||||||| | | || | || |||| || ||||| Sbjct 76 GTAGATTCTTTTTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAATTGCTTACCA 135 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| | ||||||||| || | |||||||||||| ||||| |||| Sbjct 136 GCAAAGATAAGGCGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 195 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || ||| ||| | |||||||| || || |||| ||| Sbjct 196 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTT 255 Query 19025 TTGACAAAAATTTGCATT 19042 || |||||||| |||||| Sbjct 256 TTAACAAAAATCTGCATT 273 >seq218964 Length=932 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||| || |||||||| ||||| || | | || | |||| Sbjct 851 AATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGAAAGAGTGCGGCCGTCT 792 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || || |||| | | || ||||| || | ||| || ||||| Sbjct 791 TCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 732 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||||| |||||| | | | ||| ||| ||| || ||| | ||||||||| Sbjct 731 TGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTT 672 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT-AAATCTCTTATAAA 19058 ||||| || | ||||| || ||||| |||||||| | |||| | | ||| Sbjct 671 TTACCCGTGAGTGTTTTCACGAAAATCTGCATTTTGATATCTGTAACAAA 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412941950150956