Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq21365 251 6e-62 seq117972 127 2e-24 seq218964 104 2e-17 >seq21365 Length=2821 Score = 251 bits (278), Expect = 6e-62 Identities = 639/963 (66%), Gaps = 17/963 (2%) Strand=Plus/Plus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 101076 ||||| || || ||||||| ||||||||| | || || || | ||| |||||||||| Sbjct 366 TAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 425 Query 101077 --ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 101134 | |||||| ||| || | || ||||| |||||||| || || ||||||||||| Sbjct 426 GGAATGTTGTCTTCGTAAT--CATGA-ACGCCAGTCCAACCACGACCATACATGGCAACA 482 Query 101135 CCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGATTTAACAGCGTAATCC 101194 || | | ||| || || | || ||||| | | |||| || || | || Sbjct 483 CCTAATACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCA 542 Query 101195 GTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGA 101254 | |||| || || || ||||| |||||||| | || ||||||| || ||| Sbjct 543 GATGTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGA 602 Query 101255 TCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAAC 101314 |||||||| || || ||||| || || ||||| | || || | ||| | | Sbjct 603 GTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAA 662 Query 101315 TTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTT 101374 ||||| || |||| | || || ||||| || || || ||||| ||| Sbjct 663 TTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAA 722 Query 101375 GTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAATTC 101433 || ||||||||| | ||||| | | || || | ||| || ||||| | || ||||| Sbjct 723 GTCAATTCGTATTTCTTGCCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAATTC 781 Query 101434 TTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGC 101493 ||||| ||| | || ||| | || |||| | | ||||| ||||| || Sbjct 782 TTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGTTAGC 838 Query 101494 GCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTG 101553 ||||||||||| ||||||||||||||||| ||||| || || || |||||||| | Sbjct 839 ACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAG 898 Query 101554 CAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTCGTGCA-TATAAT 101612 | ||| || || || || | |||||| || | || | | | || | || || Sbjct 899 GAGAAACTCCTTTACTGACTGCACAAAT---CGTGTTCTTTTAGATTTGTCAACTAAAAA 955 Query 101613 --AGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATT 101670 |||| || |||| | ||||| || || || || || | ||| || | | || Sbjct 956 GAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCG 1015 Query 101671 GGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGA 101730 ||| ||| | ||||| || ||||||||||||||||||||||||||||| | ||| Sbjct 1016 GGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGA 1075 Query 101731 TACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATC 101790 | ||||| || |||||||||| ||| ||||| ||||||||||| | ||||| || || Sbjct 1076 CAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTC 1135 Query 101791 TGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGC 101850 |||||| || || ||||||| |||| ||||| || || ||| | | Sbjct 1136 CTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCT 1195 Query 101851 GTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTT 101910 || || | ||| || ||||| |||||||| || || || || | |||||| | || || Sbjct 1196 ATCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATT 1255 Query 101911 GGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATA 101970 || | || | ||||| || || || | | || || ||||||||||| || || Sbjct 1256 AGGTATAGGTATACGATCCACGGGGAATTTCCTAGGGTAGACACCCCATTCTACGAAGTA 1315 Query 101971 CGC 101973 || Sbjct 1316 GGC 1318 >seq117972 Length=685 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| |||||||| || |||||||||||||| |||||||||||| Sbjct 44 TTCCACCACGAAGACGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGG 103 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | |||||||||||| || || ||| | ||||| | ||| ||||| | Sbjct 104 AAAGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTG 163 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| |||||||| ||||| ||| || | ||| || ||| |||||| Sbjct 164 GGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 223 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| |||||||| || || || | ||||| |||||||| |||||| Sbjct 224 CTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATT 273 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| ||| | | || ||||| | |||||||||||||| |||||||| || Sbjct 272 TTCCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG 331 Query 20040 CCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || |||||||||||| |||||||| ||||||| | |||||||| Sbjct 332 --AAAGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGG 389 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 || | |||||||||||| ||||| || || | ||| | || | ||| Sbjct 390 AGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTC 449 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||| |||||||| || | ||||| |||||||||||||| Sbjct 450 AACTTCTAAAGTAATTGTTTTGCCAGTAAGTGTTTTAACAAAAATTTGCAT 500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/122 (76%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--A 20053 ||| || |||||||| |||||||| ||||| || || ||||| ||||| | | | Sbjct 516 CAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAG--ATAGTGTACGGCCA 573 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||||| |||||| || ||| |||| ||||||||||| || ||| | ||||||||| Sbjct 574 TCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGAATACCTTCTTTG 633 Query 20114 TC 20115 || Sbjct 634 TC 635 >seq218964 Length=932 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || |||| | ||| |||| || || |||||||||||||| |||||||| || Sbjct 868 TTCCACCACGTAGACGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTG 809 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||||||||| || || || |||| | | |||||||| | Sbjct 808 AAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 749 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| |||||| ||| || | ||| || ||| |||||| Sbjct 748 GAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAA 689 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||||| ||||||||||| || || | ||||| || ||||| |||||||| Sbjct 688 CTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTT 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417936624463494