Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq21365 210 2e-49 seq218964 82.4 6e-11 >seq21365 Length=2821 Score = 210 bits (232), Expect = 2e-49 Identities = 646/984 (66%), Gaps = 29/984 (3%) Strand=Plus/Minus Query 30220 GTGGTGGCCGGTTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTT 30278 || |||| || ||||| ||||| |||||||| ||| || ||| || | || | | Sbjct 1327 GTTGTGGGCGCCTACTTCGTAGAATGGGGTGTCTACCCTAGGAAATTCCCCGTGGATCGT 1268 Query 30279 AGTTCCCGTCCCCAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGA 30338 | | || | || || ||||| ||| | | ||||||||| | || | ||||| || || Sbjct 1267 A-TACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGA 1209 Query 30339 TGGTATAAACGATAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTG 30398 || ||||| ||||||||||| | | || || | || | ||| || || Sbjct 1208 CGGCATAAATGATAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTG 1149 Query 30399 CGCGGGTCGAGAGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACC 30458 || || ||||| || ||||| | || |||||| |||| || | |||||||| Sbjct 1148 TAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACC 1089 Query 30459 ACAAAAAGGAGTGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGC 30518 |||||||||| || | ||| |||| || || ||||| || ||||||||| | ||| | Sbjct 1088 ACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTC 1029 Query 30519 GATTAAAAGACACAATCCCGACCTTAC-----GATTTTACCGTCTATTGGCGGGTGGACA 30573 | ||||| ||| |||| ||| | |||| | || || ||||| |||||||| Sbjct 1028 -ACTAAAA----CAAGCCCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGGACG 974 Query 30574 CTTAGCGACCCTTTCTTTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGA 30629 ||| ||| |||||||| || |||| | | || || | | || ||| || | Sbjct 973 CTTGCCGATCCTTTCTTCTTTTT-AGTT--GACAAATCTAAAAGAACACGATTT-GTGCA 918 Query 30630 GTCCGCACGAGAGTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGA 30689 ||| | | |||| | | | ||||||||||| || || || |||| ||||| ||||| Sbjct 917 GTCAGTAAAGGAGTTTCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGA 858 Query 30690 GTTTCCGGGCGGTAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAAC 30749 |||||| || |||||||||||||| || || | || |||||| ||||| | Sbjct 857 GTTTCCTGGTGGTAAAGGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTG 801 Query 30750 ATATGTGCAGTTATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTC--TAAAGAAACA 30807 ||||| || ||||||| | | || ||||| | || || || ||||| Sbjct 800 TTATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAA--T 743 Query 30808 GGGAAAAAATACCAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTT 30867 || || |||||| | | || || || |||||| | || | ||||||||| | ||| Sbjct 742 GGCAAGAAATACGAATTGACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTT 683 Query 30868 AATTATGAAAATGCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAA 30927 | || | || || ||| | ||| | ||||| ||||| | |||| || || || || Sbjct 682 GACTACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAG 623 Query 30928 GGCGCTTGGTCTAACACGGACT-TGGGATATCACACTACACTTTATTCACCCTCTTGGAA 30986 || || ||||| || ||| | ||| |||| || || | || | || | ||||| Sbjct 622 GGAGCCTGGTC-AAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAA 564 Query 30987 CGCTGAAGAAAAATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAA 31046 | | |||| || || | || | || ||| | ||||| ||| || || Sbjct 563 TCCCAAGGAAACTTACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAA 504 Query 31047 TAGTAAGAAAATAGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGA 31106 | |||||| || || ||| |||||| ||||| || | || ||||| || || ||||| Sbjct 503 TCCTAAGAAGATTGTATTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGA 444 Query 31107 CATAAAAAACAACAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGA 31166 || |||||| |||||| || || ||| || || | ||||| |||||| | Sbjct 443 TTACGAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCA 384 Query 31167 AAGTGGAGTTGTAGATTACAAAGA 31190 | ||||| || ||||||| ||| Sbjct 383 AGACGGAGTGGTTGATTACAGAGA 360 >seq218964 Length=932 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 || |||||||||||||| || | | | || || |||| |||| ||||| || || | Sbjct 830 TCTTTTTGAATGTTGTAGTCTGAAAGAGTGCGGC-CGTCTTCCAATTGCTTTCCAGCGAA 772 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| ||||| || ||||| || | | ||||||||| ||||||| || | | Sbjct 771 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATT 712 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| || || || | || ||||||||||| ||||| |||||||| Sbjct 711 TTCAATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCAC 652 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 651 GAAAATCTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419594078606774