Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq153336 141 8e-29 seq117972 116 3e-21 seq218964 109 5e-19 seq131538 96.9 3e-15 >seq153336 Length=250 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || || | |||||||| |||||||||||||||||||| || | |||||| || Sbjct 2 CATTCCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATGTTATAGTC 61 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || ||| ||| ||||| || |||||| | || || |||||||| || ||||| Sbjct 62 CGACAGTGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGG 121 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| ||||| ||||| | ||| |||||||| || ||| || |||| || Sbjct 122 AGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTC 181 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || ||||||||||| || ||||| ||||| || ||||| Sbjct 182 CACTTCTAAAGTAATAGTTTTTCCAGTTAGTGTTTTTACAAAAATTTGCAT 232 >seq117972 Length=685 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| ||||| || || | || || |||||||||||||| ||||| | Sbjct 261 AAAAATCTGCATTCCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGAT 320 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | ||||| || ||| |||| || || || | || || | | | Sbjct 321 GTTGTAGTCAG--AAAGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGT 378 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||||||||| ||||||||||| | ||||| ||||| || | | ||| Sbjct 379 TGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTG 438 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || || | || || ||||| |||||||| ||||| ||||| || ||| Sbjct 439 TCAGAGGCTTCAACTTCTAAAGTAATTGTTTTGCCAGTAAGTGTTTTAACAAAAATTTGC 498 Query 95006 AT 95007 || Sbjct 499 AT 500 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/142 (76%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || || || | ||||||||||||||| | |||||||| ||||||| | Sbjct 514 CGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAG--ATAGTGTACGGC 571 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| ||||| |||||||| |||| || | || || || ||||| ||||||||||||| Sbjct 572 CATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGAATACCTTCTT 631 Query 94911 TGTCATAAATTTTTGCCTTGAC 94932 |||| | || |||||||| || Sbjct 632 TGTCTTGGATCTTTGCCTTCAC 653 >seq218964 Length=932 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||| ||| | ||||||||| ||||| | ||| || || | |||| | Sbjct 854 CGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGAAAGAGTGCGGCCG 795 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || ||||| | || || || | ||| |||||||||||||| ||||| ||| Sbjct 794 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 735 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || | | |||||| | | || || || | || ||| Sbjct 734 TCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAACTTCCAAAGTAATG 675 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || |||||||| || |||||||| Sbjct 674 GTTTTACCCGTGAGTGTTTTCACGAAAATCTGCAT 640 >seq131538 Length=717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/171 (74%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 94765 TTTAA-AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTT 94823 ||||| || |||| || || ||||||| || | || | ||| | ||||||||| || | Sbjct 174 TTTAAGAAGTTTAAACACCACCTCTCAGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCT 115 Query 94824 GCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 | | || ||||| ||| |||| | ||| || || || || ||| |||| || || Sbjct 114 GAATATTGTAATCAG--ATAATGTTCGTCCATCTTCAAGTTGCTTACCGGCAAAAATCAA 57 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || || ||||||||||| ||||||||||| | |||||||||||| || Sbjct 56 CCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTAAC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446482490702640