Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq16280 136 8e-28 seq289985 80.6 5e-11 >seq16280 Length=4102 Score = 136 bits (150), Expect = 8e-28 Identities = 350/524 (67%), Gaps = 22/524 (4%) Strand=Plus/Minus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTA-GGTTT--- 4529 ||||| || |||||||| || |||| |||| | |||||| ||| || ||||| Sbjct 1931 AAAAAAAAATATGTTATACATTATAGAAATCTTTTGCAATGTG-AGAAATATGGTTTGCG 1873 Query 4530 AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATA 4589 ||||| | ||| | || ||| || ||||| ||||| | ||| | ||| ||| Sbjct 1872 AGTTC---AAAAAGTTCATAGAGTATTAAAATTCAAGCAAAAACCTTGGTTAAAAAAATA 1816 Query 4590 TATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649 ||| || ||| ||| || |||| |||| | || || |||||| | ||||| Sbjct 1815 TATTGAATTAAACACCCAATTACGAACTTTAGCAACATCCGACTTTGAAAAAGATTTTTA 1756 Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAA-AG 4708 ||| | ||||||||| | || ||||||||||| ||||| ||| | |||||| | | | Sbjct 1755 TAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAAAATAT-CGAAAAAAGAGTAA 1697 Query 4709 ATATATATTTAAGAACAAAGTGGCAAAGTCA-------ATACAATGTAT-CGGATTTAGT 4760 | || | ||| |||| | ||| ||| ||| || || || | | || | Sbjct 1696 ACGTAAAGTTATTAACACACTGGAAAAATCATGGAAAAATCAAAGGTGTTCAGAGTCTCA 1637 Query 4761 ATG-TAGACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATGGTTATAGTTGAAC 4819 || | | || | |||||||| ||| | |||||| ||| || |||| ||| ||| Sbjct 1636 TTGCTCGCCCCGAATTCCACAGTCTTTCCATTTTTTCTGAAAATTTGGTCGCAGTCCAAC 1577 Query 4820 TTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATT 4879 || ||| ||| | | | | || ||||| || ||| |||| ||||| |||||||| Sbjct 1576 TTCGCAAAACTAAATTGTTTTATAATAAGCCCATATATTTAGGTTTTAGCATATTAGAGA 1517 Query 4880 TATCTAAAATTTATATTTATGACTTTCATTACAATTATGTTATGCAAAATTATGTAAATA 4939 |||| || | || || ||||||||||| || | || ||| ||||| | | | || Sbjct 1516 TATCAAAGACTTTAATGTATGACTTTCACTATCAGTA---CATGAAAAATAAATTTACTA 1460 Query 4940 CCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTACCAA 4983 | |||||| || || ||||| || |||||||| || |||||| Sbjct 1459 ACATAAAATTGTTATATACTGATACTGATAGTCTGATATACCAA 1416 >seq289985 Length=339 Score = 80.6 bits (88), Expect = 5e-11 Identities = 152/221 (69%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 4849 CCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCAT 4908 || ||||| |||| || || || ||| |||| |||||| || ||||| |||||| Sbjct 338 CCCATCTACTTAGGTTTCTCAATTTTGGATATATCGAAAATTCTCATGTATGATTTTCAT 279 Query 4909 TACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGAT 4968 || | || | | |||| | || || | |||||| |||||||||| ||||| Sbjct 278 TATGAATACATATTAAAAAAGTTTGACAACAAAGTTAAATTAATGTACACTGATACAGAA 219 Query 4969 AGTCTAATTTACCAATTTAATGTACCCAACATCT--ATGAAGACATCAAACGTGATAT-- 5024 ||| | || |||||| || | |||| || || | |||||||||||| | |||||| Sbjct 218 AGTTTCATATACCAAATT--TTTACCGAAAATTTTTATGAAGACATCATGCCTGATATAC 161 Query 5025 -TTCAAGGTTTGATACCTCCAATTACCCGCCTAACAATGTC 5064 ||| |||||||| || | |||||| | || ||| || Sbjct 160 CATCACTATTTGATACTTCTAGTTACCCTACAAATAATATC 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97598869880796