Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25]
322,774 sequences; 210,868,349 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 506 3e-138
seq197295 95.1 2e-14
>seq5177
Length=4331
Score = 506 bits (560), Expect = 3e-138
Identities = 1097/1621 (68%), Gaps = 43/1621 (3%)
Strand=Plus/Minus
Query 61977 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62036
|||||| | ||||| | || || ||||| | | | ||| ||||| || |||| |||
Sbjct 3775 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 3716
Query 62037 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62096
|||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| |
Sbjct 3715 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 3656
Query 62097 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62156
|| | || | || | ||| || || | |||||||||||| || || || ||||| ||
Sbjct 3655 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 3596
Query 62157 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62215
|| || ||||| | |||| || || ||| ||| ||||| | ||||| || || ||
Sbjct 3595 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 3536
Query 62216 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 62272
||| || |||| || | ||| | ||| || || |||||| | |||||
Sbjct 3535 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 3477
Query 62273 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 62331
||| || || || |||| |||||| | |||| || ||| | | || ||||| | |
Sbjct 3476 ATTTTTCATATCTTCATCCCATAA-ATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGT 3418
Query 62332 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62391
| ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||
Sbjct 3417 TCACTACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 3358
Query 62392 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451
| | || ||| | || || | |||||| ||||| || ||||||||||||||||| | ||
Sbjct 3357 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 3298
Query 62452 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 62509
||| | ||| | | ||| ||||| || || || ||||| || |||| | |||
Sbjct 3297 ATAGAGAATTACGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTCCCA 3240
Query 62510 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 62568
||| || | || || || ||||| | || || | ||
Sbjct 3239 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC- 3181
Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628
|||| |||||| ||||| ||||| || || |||| ||||||||| || |||||||
Sbjct 3180 TTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 3121
Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688
|||| |||||||| ||||| || || | | ||| || | ||||| | || ||
Sbjct 3120 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 3061
Query 62689 ATGGATAAT-TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747
| || || | | | | | ||| | || || | || ||||||||||||||||||||
Sbjct 3060 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGA 3002
Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807
| || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | |
Sbjct 3001 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 2942
Query 62808 TTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62864
|| || | |||| | ||||| ||| | | || || | ||| |||| ||||
Sbjct 2941 TTGTTTAAATTTTGAGTCACAAT--CTTAG-TGATTTCTTTTAATTTTTTAAAACTAAAT 2885
Query 62865 CGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 62924
|| || | ||||||||||| | || | || || || || || || || || |||
Sbjct 2884 CGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCA 2825
Query 62925 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 62981
| | || | | ||||| | | ||||||||||||||| ||||| || ||||| ||
Sbjct 2824 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 2768
Query 62982 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63041
| ||||| ||||||||||||| |||| || ||||||||||| | || |||| ||||||
Sbjct 2767 AGATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCA 2708
Query 63042 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 63101
|| || | |||| ||||||||| | ||||| | || |||| | | | | |||
Sbjct 2707 GTCTCCACTTGAGCTTCTATAATAGACTTCCATAACTCTTGAGCTCTGA--CTCGTTTTA 2650
Query 63102 TATCTCCTTTCTCT--TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63159
|| | ||| ||| ||| ||| | ||| | |||||| || ||||| || |
Sbjct 2649 TAAACCGTTTTTCTTCTTCATATTTGGCATATAGGGCTTCGAATTCCTCTCCGTAACAGT 2590
Query 63160 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CA 63216
| | |||||||| |||| |||||||| | ||| ||| |||||||| |
Sbjct 2589 CAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTA 2533
Query 63217 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 63276
| | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||
Sbjct 2532 CCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 2473
Query 63277 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63336
| || || ||||| |||||||| | ||| | |||| | | || || | |||||| || |
Sbjct 2472 CTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCT 2413
Query 63337 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63396
| ||||| || || | | || || ||||||||||| || ||||||| ||||| || |
Sbjct 2412 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 2353
Query 63397 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63456
| || || || |||||||||||||| | | ||| || || | ||||| || || | |
Sbjct 2352 TATTGTTGTACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTA 2293
Query 63457 TATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63513
|||| || ||| | ||| || || || || |||||| || || || ||
Sbjct 2292 TATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATT 2236
Query 63514 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA 63573
|||| |||||||| ||| ||||||| || || | ||||| || |||||||| || |||
Sbjct 2235 TAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCA 2176
Query 63574 T 63574
|
Sbjct 2175 T 2175
Score = 105 bits (116), Expect = 8e-18
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814
||| |||||||| |||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 1678 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 1619
Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865
| ||| |||| || |||| ||| | |||| | ||| ||||| | |||
Sbjct 1618 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 1568
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025
|| || || || || |||| ||| |||| ||||||||||| || | ||||||||||||
Sbjct 1022 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 963
Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085
||||| | ||| || ||| ||||| ||||| || || ||| | || | || | |||
Sbjct 962 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 903
Query 64086 GTTACTCCATTATATATTCC 64105
||||| ||| |||||| ||
Sbjct 902 GTTACACCAGAATATATGCC 883
>seq197295
Length=1118
Score = 95.1 bits (104), Expect = 2e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849
||||||| ||||||||||| | |||||||| ||||| || || ||||||||||| | |
Sbjct 393 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 334
Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884
|| ||||| ||||||||||||||| ||||| ||
Sbjct 333 CATATGTCGGGATATTGGATTGGGAATATAACGAA 299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620433810505840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |