Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21365 156 4e-33 seq117972 114 1e-20 seq218964 109 5e-19 seq153336 100 3e-16 >seq21365 Length=2821 Score = 156 bits (172), Expect = 4e-33 Identities = 346/515 (67%), Gaps = 22/515 (4%) Strand=Plus/Minus Query 22307 AAAATTGTCGCCGGCTATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGAC 22366 ||| |||| | || ||| || || || ||||| || |||| | | | || |||| || Sbjct 1330 AAAGTTGTGGGCGCCTACTTCGTAGAATGGGGTGTCTACCCTAGGAAATTCCCCGTGGAT 1271 Query 22367 AAGGTGCCCGTGCCGAACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGA 22426 | || | || || || | ||||||||||| || || | || || |||||||| Sbjct 1270 CGTATACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGT 1211 Query 22427 GACGGCATCAACGACGCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCG 22486 |||||||| || || | | ||| | | || || ||| | || |||||||||| Sbjct 1210 GACGGCATAAATGATAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCC 1151 Query 22487 TG---CGTCAATAGAGCCGATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAA 22543 || || | | ||| || ||||| || | || |||||||| ||||| || ||||| Sbjct 1150 TGTAGCGGCCGT-GAG--GACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAA 1094 Query 22544 AAACCTCAAAAAGGCGTGTCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTG 22603 ||||| |||||||| |||| || |||||||| || ||||||||||||||||| ||||| Sbjct 1093 AAACCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTA 1034 Query 22604 ATGGCAGTGAAAAGAGCGAATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACG 22663 ||| || | ||| ||| ||| | | || | | | ||||| || || |||||| Sbjct 1033 ATGTCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGGACG 974 Query 22664 TTGTCCGATCCGTT----TTATCATATG-CA---CGACAAGAACGTGAGACAAATTTTCA 22715 | ||||||| || || | | || || | | |||||| || || Sbjct 973 CTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAAAGAACACGA--------TTTG 922 Query 22716 TCGATTCGGTGGAAGAGTATTTGATCACGTGGAAGTTCTTTGACGGCGTCGATATTGATT 22775 | | || || | |||| | | | || ||||| ||||| || || || ||||| |||| Sbjct 921 TGCAGTCAGTAAAGGAGTTTCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATT 862 Query 22776 GGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTAAC 22810 |||||||||| || || || || || || ||| || Sbjct 861 GGGAGTTTCCTGGTGGTAAAGGTGCTAACCCTGAC 827 >seq117972 Length=685 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| |||||||| | ||||| ||||||||||| ||||||||| Sbjct 45 TCCACCACGAAGACGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGA 104 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || | || || ||||| |||| | ||||||||||| || || Sbjct 105 AAGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGG 164 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| ||||| |||||| || | | ||| | || || | || || Sbjct 165 GATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 224 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || || ||||| |||||||||||||| Sbjct 225 TTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 272 >seq218964 Length=932 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||| |||| || | ||||| ||||||||||| ||||| || Sbjct 867 TCCACCACGTAGACGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGA 808 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || | || ||||||||| | ||||| || || ||||| ||||| Sbjct 807 AAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 748 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| |||||| || | | ||| | ||||| | | || || Sbjct 747 AATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAAC 688 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || || ||||| || ||||||||||| Sbjct 687 TTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCAT 640 >seq153336 Length=250 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || |||||||| || || | ||||| || || || || || || || Sbjct 5 TCCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATGTTATAGTCCGA 64 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || || || ||||| ||| | ||||||| || || || ||||| Sbjct 65 CAGTGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGG 124 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| ||| | | ||| || | | ||||| || || | | || | Sbjct 125 AATGCCTTCCTTGTCT-TGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTCCA 183 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || || |||||||||||||| ||||| Sbjct 184 CTTCTAAAGTAATAGTTTTTCCAGTTAGTGTTTTTACAAAAATTTGCAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473582308809760