Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq21365 250 2e-61 seq5177 219 4e-52 seq153336 143 2e-29 seq218964 120 3e-22 seq117972 114 1e-20 >seq21365 Length=2821 Score = 250 bits (276), Expect = 2e-61 Identities = 644/969 (66%), Gaps = 23/969 (2%) Strand=Plus/Plus Query 50155 TGTAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATTCCCGTAA 50214 |||||||||| || ||||||| |||||| ||| | || || || ||| | || || | Sbjct 364 TGTAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGA 423 Query 50215 ACGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCACGC 50274 | ||| ||| ||||| ||| | ||||| |||||| | || |||||||| || | Sbjct 424 AGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACAC 483 Query 50275 CTACGATTATTTTGCTCGGCTGCACGTTTTGATCGAG-AAGAACGTTTACCGCAAAATCG 50333 ||| | || || | || | ||| || | | ||| | ||||| | || || Sbjct 484 CTAATACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTAT-TTTACTCCGAAGTCA 542 Query 50334 GTCGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAAA 50393 | ||||| |||| | || |||||||| ||||| ||||| || || |||||||| | | Sbjct 543 GATGTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGA 602 Query 50394 TCGACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATAA 50453 | | ||||| || || || || || |||||||| || || || | ||| | |||| Sbjct 603 GTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAA 662 Query 50454 TTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCTC 50513 |||||||| | |||||| | |||| ||||||||| | || | ||||| || Sbjct 663 TTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAA 722 Query 50514 GTCAATTCGAATTCGCGGCCGGTGACGCGTTGA-AGATCGTCCAGCATGTCGCGCAGATC 50572 ||||||||| ||| ||| | | ||| || || || ||||| || || | || Sbjct 723 GTCAATTCGTATTTCTTGCCATTCTTA-GCTGAGAGCTCATCGAGCATCTCACGTAATTC 781 Query 50573 GCGAAGCAGCACAACGTACGTGAGT----CCGTCTTTGTGAGGATCGCCGACTGCGGGAT 50628 | || ||| ||| | | || |||| || || | |||| | || | Sbjct 782 TTTCATCA----AACTTACATAACAATCACCATCTTC-TG-GGCTA-CCGAGGTCAGGGT 834 Query 50629 TGGCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAG 50688 | || || || || || ||||||||||||||||| || || || ||||| || ||||| | Sbjct 835 TAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATG 894 Query 50689 TCAGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTTTCCGCGTCGTGCATGT 50748 | || |||||||| ||| || | |||||| | || ||| | | || || | Sbjct 895 TTAGGAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTTTTA---GATTTGT-CAACT 950 Query 50749 GAAAA----AATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGTGC 50804 |||| || ||||||| | |||||| || || || || || | | ||| | | Sbjct 951 AAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCA 1010 Query 50805 GGGTTGGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCCAA 50864 ||| ||||| ||||| | ||| | ||| || || || |||||||| || |||||||| Sbjct 1011 GGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCAT 1070 Query 50865 GCCGAGACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTA 50924 | || | || ||||||||||| |||| || ||||| || ||||| || || ||||| Sbjct 1071 GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTG 1130 Query 50925 AAATCGGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTTTTC 50984 || || | |||||| || || || ||||| || | ||||||||| || ||| Sbjct 1131 AAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTT 1190 Query 50985 AACGCGTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCGAC 51044 || || || | ||| || ||||||||||| || | || || || |||||||| | Sbjct 1191 AAGCTATCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTA 1250 Query 51045 AAATTGGGGGCAGGAATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATTCTACA 51104 | ||| || ||| || || ||| ||| | | ||| || ||||||||||| Sbjct 1251 AGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGGTAGACACCCCATTCTACG 1310 Query 51105 AAATACGCG 51113 || || ||| Sbjct 1311 AAGTAGGCG 1319 >seq5177 Length=4331 Score = 219 bits (242), Expect = 4e-52 Identities = 664/1020 (65%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 |||| || ||||| | || | | || || ||| |||||||| |||| || || Sbjct 2410 TAGAGCCTTGGCATGCGGACATATTTGAGTTCTTAGATTTAAAAAAGAACACAGGTAAGG 2469 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 |||||| || ||| | || |||| || ||||||||| |||| ||| |||||||| | Sbjct 2470 AAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATACCAGATCTGTTTATGAAAA 2529 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492 | ||| || | || | | ||| ||||||||||| || ||||| ||| | | Sbjct 2530 GGGTAGAAAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTGTCCTGGCCTCGCTG 2589 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGG 123552 || |||||| | | || || | | || || |||| || |||| |||| | Sbjct 2590 ACTGTTACGGAGAGGAATTCGAAGCCCTATATGCCAAATATGAA---GAAGAAAAACGGT 2646 Query 123553 TTAGTCA--GGTTCCG-GCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAA 123609 ||| | | || | || | || || | || | |||||| ||| | ||||| || | Sbjct 2647 TTATAAAACGAGTCAGAGCTCAAGAGTTATGGAAGTCTATTATAGAAGCTCAAGTGGAGA 2706 Query 123610 CCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACT 123669 | || || || || ||| | || || || || |||||||| || | ||||| | || Sbjct 2707 CTGGTACACCATATATGTTGTATAAGGATGCTTGCAACAGAAAGAGTAATCAAAAAAATC 2766 Query 123670 TGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATC 123729 | || || || |||||||| ||||||||| | || || | |||||| | ||| Sbjct 2767 TTGGCACTATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAAGATG 2826 Query 123730 AAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGGCGCTT 123789 ||||||| ||||| || | ||||| || | || | || ||||| | Sbjct 2827 AAGTGGCAGTGTGCAACCTTGCTTCCATAGCACTTAACATGTTTGTTGAAAATAATCGAT 2886 Query 123790 TTAATTTCCAAACGCTCAAACGCATAACAAAAACTGT-AGTAAAGAATTTGAACAAAATT 123848 ||| ||| ||| | ||| || || || | ||| | | || ||||| |||||| | Sbjct 2887 TTAGTTTTAAAAAATTAAAAGAAATCACTAAGATTGTGACTCAA-AATTTAAACAAAGTC 2945 Query 123849 ATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCG 123908 || |||||||| ||||||||| | ||||| || ||| ||| ||| | || Sbjct 2946 ATTGATGTTAACTTTTATCCTGTCCCTGAAGCAAAAACTTCAAATATGAGGCACCGTCCT 3005 Query 123909 GTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAA 123968 |||| | || |||| || |||| || | ||||| || || | || || |||||| Sbjct 3006 ATCGGTATTGGTGTTCAGGGTATGGCAGATACATTTGTGTTGATGAGAATACCTTACGAA 3065 Query 123969 AGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTG 124028 || || |||||| | |||||| |||||| |||||||||||||| || || || Sbjct 3066 AGTGAGAAAGCAATACTCCTTAATCAACAAATATTTGAAACAATTTATTATGGTGCATTA 3125 Query 124029 GAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCG 124088 || || || || ||| | || ||| | || || ||| | || || || || Sbjct 3126 GAAGCTAGTTGTGAATTAGCAGAAAAAGAAGGTGCATACAGCACATATCAAGGAAGTCCA 3185 Query 124089 GCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGAC 124148 || |||| |||||| | ||||| || |||||||| || || ||| | | |||||| Sbjct 3186 GCTAGCCAAGGTATCCTCCAGTATGATATGTGGAACAAAACTCCTACAGACCTTTGGGAC 3245 Query 124149 TGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCG 124208 ||| || | ||| || ||| | | || ||||||||||| || || ||| | || Sbjct 3246 TGGGCTGTCCTCAAAGAAAAGATAGCAAAACATGGTTTGCGTAATTCTCTATTGATAGCA 3305 Query 124209 TACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTC 124268 |||||||| || | ||||| |||||| | || |||| ||||| || || || || Sbjct 3306 CCTATGCCGACTGCCTCTACTGCACAAATTCTTGGCAACACTGAATCTTTTGAACCATTT 3365 Query 124269 ACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCAT 124328 || ||| | ||| || |||| ||| | || || |||| || | || |||||| Sbjct 3366 ACATCAAATATTTACCAAAGAAGAGTTTTATCTGGAGAATTTCCTGTAGTGAACCATCAT 3425 >seq153336 Length=250 Score = 143 bits (158), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | |||||||| |||| || |||||||| ||||| ||||| || Sbjct 3 ATTCCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATGTTATAGTCC 62 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| |||| ||| ||||| ||| | ||||||| ||| ||||| | Sbjct 63 --GACAGTGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTG 120 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || |||||||| ||| || | ||| | || || |||| | Sbjct 121 GAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTT 180 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||||| ||||| || ||||| |||||||||||||||||||| Sbjct 181 CCACTTCTAAAGTAATAGTTTTTCCAGTTAGTGTTTTTACAAAAATTTGCAT 232 >seq218964 Length=932 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | ||| || || || || || ||||| ||||| || || || || Sbjct 869 ATTCCACCACGTAGACGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTC- 811 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || |||||||| ||||| ||| | ||||| ||||| || || | Sbjct 810 -TGAAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTG 752 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || ||||||||||| ||| | ||| | |||||||||| | Sbjct 751 GAGGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTT 692 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 691 CAACTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCAT 640 >seq117972 Length=685 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||||| || ||||| |||||||| || || || || || | || ||| | Sbjct 292 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA--GAAAGTGTACGACCATCTT 349 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||||||| || || ||| | || | ||||| || || || |||||||||||||| |||| Sbjct 350 CCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTT 409 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | ||||| || | ||| | ||||| || | || ||||| | ||||| |||| Sbjct 410 GGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAAAGTAATTGTTT 469 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || ||||| |||||||||||||| Sbjct 470 TGCCAGTAAGTGTTTTAACAAAAATTTGCAT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450179513989040