Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq21365 271 5e-68 seq117972 107 1e-18 seq218964 98.7 7e-16 >seq21365 Length=2821 Score = 271 bits (300), Expect = 5e-68 Identities = 857/1306 (66%), Gaps = 44/1306 (3%) Strand=Plus/Plus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 || || | ||| ||||||| ||||| | |||||||||||||| ||||| |||||||| Sbjct 129 TTACCGAGACCCATGTTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAA 188 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 ||||| | |||||| | || || | ||||| ||||| ||| | | || ||| | Sbjct 189 GCAAAGAGACCACCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGATCTA 248 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 | ||||| || || || | || | | || || |||| || |||| ||| || Sbjct 249 GCATTGTCATAGGTTACAAGGTCTCCAGTTGATGGTCTGAAGACATAAGGAGCTTGGGCG 308 Query 5991 ATGTTATCATA--GAATTGTACACTTTCGTCGTACCTATTTA-----CAATATCTTTATA 6043 | || || || ||| | ||||| | | | | | |||| |||| ||| | || Sbjct 309 ACATTGTCGTAATGAAATTCCCACTTGCCTTG-AGCAATTTCATTCGCAATCTCTCTGTA 367 Query 6044 ATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGG 6103 ||| | || ||| || ||| |||||||| || || | |||| | ||||| || || Sbjct 368 ATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGG 427 Query 6104 ATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTA 6162 | | |||| |||| | || ||| || || |||| || || |||||||| || ||||||| Sbjct 428 AATGTTGTCTTCGTAATC-ATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTA 486 Query 6163 CTACTAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGTT 6221 ||| | || | | || || || ||||| | | ||| | | || | | | Sbjct 487 ATACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTC-CGAAGTCAGAT 545 Query 6222 GTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTT 6281 |||||| |||| || | ||| | ||| ||||| | ||||||||| || | | | Sbjct 546 GTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTA 605 Query 6282 TCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGT 6341 || | ||||| || || || || || || |||| | || |||| ||| | ||| | Sbjct 606 TCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTT 665 Query 6342 TGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTT 6401 || || | || || ||||| | |||||| || | || | | ||||| ||| Sbjct 666 TGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTC 725 Query 6402 AGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTT 6461 | || || || || |||| | | | | |||||| || ||||| || || Sbjct 726 AATTCGTATTTCTTGCCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTC 785 Query 6462 AAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCT 6521 | | || ||| | | ||| ||| | | || || ||||| |||||| Sbjct 786 ATCAAACTTACATAACAATCACCATCTTCTGG---GCTACCGAGGTCAGGGTTAGCACCT 842 Query 6522 TTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAA 6581 ||||| || |||||||||||||| || || || || ||||| |||||||| ||| | | Sbjct 843 TTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGA 902 Query 6582 AATTCGCGCACACTATCAACAAA-CGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTAA 6638 || || || | ||||| ||| || |||| || ||| ||| | | Sbjct 903 AACTCCTTTACTGACTGCACAAATCGTGTTC---TTTTAGATTTGTCAACTAAAAAGAAG 959 Query 6639 AACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGG 6698 || |||||| ||||||||| || || ||||| || | || | || || || | || Sbjct 960 AAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGG---GCGG 1016 Query 6699 CGCTTGATC----GCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTC 6754 ||||| | | |||||| || |||||||| |||||||| || ||||| | | Sbjct 1017 -GCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAA-- 1073 Query 6755 GACA--CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAA 6812 |||| ||||||||||||||||| | ||| ||||| ||| || || | |||||||| Sbjct 1074 GACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAG 1133 Query 6813 TCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTT 6871 || | |||||| || || ||||| || | |||| || | || | || || Sbjct 1134 TCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCG-ATCTCTT--TT 1190 Query 6872 AAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGT 6931 |||| ||| |||| || || ||||| ||||| || ||||| || || | |||||| || Sbjct 1191 AAGCT-ATCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGT 1249 Query 6932 AAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCAC 6991 ||||||||| || || || || |||| ||| ||| ||| ||||||||||| || Sbjct 1250 AAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGGTAGACACCCCATTCTAC 1309 Query 6992 AAAGTAAGCGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTCCGACCA 7051 ||||| ||||||||||| || | | ||| | ||| ||| ||| ||||| | | Sbjct 1310 GAAGTAGGCGCCCACAACTTTTCCAGATGTTTGCTTGAATGGTTTATTTTTTTCTCCCAA 1369 Query 7052 CATATATTTTATAGGATTTAAATGCGAACCGTCTGTATCGGCCACG 7097 |||||| | |||| |||||| || || |||||||||||| Sbjct 1370 TGTATATTCCAAAGGAAGTAAATGACTTCCATCAGTATCGGCCACG 1415 >seq117972 Length=685 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||| | ||| ||||||||| || || ||||||| Sbjct 46 CCACCACGAAGACGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAA 105 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||||||| || || |||| || | ||||||||||| | || Sbjct 106 AGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGGG 165 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| ||||| ||| | | | | || || | | |||||| Sbjct 166 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 225 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || || || |||| ||||| || || |||||||| Sbjct 226 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 272 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| ||||| ||||||||||| ||||||||| || || || || | Sbjct 274 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG-- 331 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||||||| || || | ||||| | ||| || ||||| | | Sbjct 332 AAAGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAG 391 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||||||||| ||||| || | | | | |||||| | | ||| | Sbjct 392 GAATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAA 451 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||||||||||||| || || | ||||| || || || ||||| Sbjct 452 CTTCTAAAGTAATTGTTTTGCCAGTAAGTGTTTTAACAAAAATTTGCAT 500 >seq218964 Length=932 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||||||||| || || || || | Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGAA 807 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| | || |||||||| || || | ||||| ||||| || ||||| | || Sbjct 806 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 747 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | | | | ||||| | ||| || Sbjct 746 ATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAACT 687 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 686 TCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346003114645142