Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5177 517 1e-141 seq228136 136 4e-27 seq197295 129 7e-25 >seq5177 Length=4331 Score = 517 bits (572), Expect = 1e-141 Identities = 1186/1786 (66%), Gaps = 39/1786 (2%) Strand=Plus/Minus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || |||||||||| ||| | ||| |||| |||||| ||||| || ||||| | Sbjct 3768 CTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTC 3709 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 | || |||||||| | |||| | | |||||| || |||| ||| ||| ||| Sbjct 3708 CTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAG 3649 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 ||| | || ||| || |||| ||||||||| || || |||||||| ||||||||||| | Sbjct 3648 GTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTATCAGCCG 3589 Query 47152 CCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 |||| | || | ||| ||| ||||||||||| ||||| || | | | | || Sbjct 3588 CCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT 3531 Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 |||| |||| || | | | ||| |||||||| ||| | |||||| ||||| Sbjct 3530 TTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTT 3471 Query 47267 taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 | || | ||| | | | ||| || | | ||||||| | || || | Sbjct 3470 CATATCTTCATCCCATAAATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGTTCACTAC 3411 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 ||||||||||||||| ||||| | || ||||| |||| ||||||| | ||| Sbjct 3410 AGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGATGTAAATGGTTCAAAAGA 3351 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 |||| | || |||| |||||| ||||| || || || ||||| | ||| | |||| Sbjct 3350 TTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCAATAGAGA 3291 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||| | | |||| |||| ||||| ||| |||||||| |||| Sbjct 3290 ATTACGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTCCCAAAGGTCTGT 3231 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| ||||| | |||||| || || || |||| || ||| || | ||| Sbjct 3230 AGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATA 3171 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||| | || | ||| | | || || | ||||||||| ||||| ||||||| |||||| Sbjct 3170 TGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATA 3111 Query 47627 TATTGTTTCAAATATTTTTATGTTTA--GATTCCTTGCTT-CTGATGATTCAAAAGGATA 47683 |||||||||||||||| | || ||| || | |||||| || | ||| |||| Sbjct 3110 AATTGTTTCAAATATTTGT-TGATTAAGGAGTA-TTGCTTTCTCACT-TTCGTAAGGTAT 3054 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 ||||||||||||| || |||||||||||||| || || | || | Sbjct 3053 TCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGACGGTGCCT 2994 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||| ||| | ||||| || | ||||| ||| | ||| || | ||| |||| Sbjct 2993 CATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAA 2934 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTAT 47863 | |||||| ||||||| |||||| ||| |||||| Sbjct 2933 ATTTTGAGTCACAATCTTAGTGATTTCTTTTAATTTTTTAAAACTAAATCGATTATTTTC 2874 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| | ||||||||||| || || || || || || || || |||| | ||| Sbjct 2873 AACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGT 2814 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| | | |||| || ||||| | |||||| ||||| || | ||||| ||||| Sbjct 2813 GTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATT 2754 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | |||| || || ||||| || | |||| | ||||| ||||| || | |||| Sbjct 2753 ACTCTTTCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCAGTCTCCACTTGAGC 2694 Query 48044 TTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTATTA---- 48098 ||| || ||||| ||||| | | || | ||| | | || | ||||| | Sbjct 2693 TTCTATAATAGACTTCCATA-ACTCTTGAGCTCTGA--------CTCGTTTTATAAACCG 2643 Query 48099 ----TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTA 48153 || | ||| ||||| | ||||| || ||||| || || || ||| | | | | Sbjct 2642 TTTTTCTTCTTCATATTTGGCATATAGGGCTTCGAATTCCTCTCCGTA-ACAGTCAGCGA 2584 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 |||||||| |||| ||||||||| | |||||| ||||| |||| ||| || ||| Sbjct 2583 GGCCAGGACAATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACCCTTTTCA 2524 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273 |||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| || | Sbjct 2523 TAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTAC 2464 Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 | | ||| |||| | || | || || | ||| || |||||||| || ||||| || | Sbjct 2463 CTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAA 2404 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 |||| | | |||| || ||||| || || |||||||||| |||||||||||||||||| | Sbjct 2403 TTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGT 2344 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | ||||| |||||||| || | |||||| || | ||||| || || | |||||| | Sbjct 2343 ACACTCTCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTATATAAGACC 2284 Query 48454 CACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | ||||| || || || || || |||||| ||||| || |||||| |||| Sbjct 2283 CCTGGGCTCTAATGCAATGTGTA--TGTAA-ACCTATGCCACCGGCAGATTTAGAAATTA 2227 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| | ||||| |||| ||||| || ||||| ||| ||||| || | Sbjct 2226 ATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAA 2167 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | || || || | || || | || | | || | ||| || ||||| Sbjct 2166 GGAAGCAGGAGGAAAGCTGTGGCCGCGGTGTAGCAGCTGAGAACAGTGTAGGGCTTGCAT 2107 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 2106 GTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCAC 2047 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 ||| || ||||| || || | ||| | ||| | |||||||||||| Sbjct 2046 CATGAATCCCTATGGAGACTCTCATAAGCATGTGTTGAGGTCTTTC 2001 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||| Sbjct 1677 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 1618 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 1617 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 1568 >seq228136 Length=1993 Score = 136 bits (150), Expect = 4e-27 Identities = 250/364 (69%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 ||||| || ||||| |||||||| |||||| | || |||| || || | || | | Sbjct 762 ATGACCCCAGTATTA--CCAATGTTAGCAGAAGCTTGCAAATCAGTTGAAATGGCTATGA 705 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || ||| | || ||||||||||| |||||||| || || || | Sbjct 704 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 645 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 644 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCGGTAATGGCTCACA 585 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTT 136871 ||||| | || |||| || ||| |||||||||| ||| || | | | | | |||| Sbjct 584 AAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGATTT 525 Query 136872 TAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTT 136928 | ||| | ||| || | | || ||| |||| | |||||||| || ||||||| | Sbjct 524 TGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGCACAT 465 Query 136929 TGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATT 136988 | ||||| || ||| | |||| ||| ||| | | | ||||||| | ||||||||| Sbjct 464 TAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGATT 405 Query 136989 GTTT 136992 | || Sbjct 404 GCTT 401 >seq197295 Length=1118 Score = 129 bits (142), Expect = 7e-25 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || || |||||| |||||| || ||||||| |||||| ||||| || ||||| || || Sbjct 721 TCAATTAATAAAGAGTACATCTCCGAATGAACATTTTCCATAGCAATTTGAAAACCATAG 662 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 || || || ||||| || | || || || | || | || ||||| || |||||| Sbjct 661 AAGCACCTGGCTTCAGTCACTTGAACCTCTTGCGAGAAACGCTCCACCAAGTTCTCATTA 602 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC---A 19416 || || |||||| ||| ||||| |||||||| |||||||| ||||||||||| || | Sbjct 601 ACAATACCATCAGAAGCCGCAAAGAATGCTAAGACATGTTTGATAAAATGTTTCTCGCAA 542 Query 19417 TCTGAGGTTAATGTATTCCAATC 19439 ||| ||||||| | |||||| Sbjct 541 TCT---TTTAATGTCTCCCAATC 522 Score = 96.9 bits (106), Expect = 4e-15 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| |||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 400 TAATACCTT-AGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 342 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | |||||| || ||||||| || || |||||||| || Sbjct 341 ACATCTGCCATATGTCGGGATATTGGATTGGGAATATAACGAA 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559840873677360