Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25]
322,774 sequences; 210,868,349 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq148067 178 4e-39
seq5177 138 3e-27
seq54952 116 1e-20
>seq148067
Length=1860
Score = 178 bits (196), Expect = 4e-39
Identities = 346/500 (69%), Gaps = 16/500 (3%)
Strand=Plus/Minus
Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908
||||||||| ||||||| | ||| ||| |||||| || || ||||||| || ||
Sbjct 1556 CCTATCAAATCTACCAGGTCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTAGC 1497
Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966
|| ||||| |||| | || | | ||| || || |||||||| | || || ||||
Sbjct 1496 AGCTAATACTACAACA--TTGGTTGTTGTGTTGAAACCATCCATTTCTACTAGAAGTTGA 1439
Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA--TCACCCGAATCGCTCCttt 289024
||||| || | ||| ||| || ||||| || || || || ||| |||
Sbjct 1438 TTAAGAGTGTTTTCTTGTTCTGAATG---ACCTCCAAAACTTCTACC---TC-CTC-TTT 1387
Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084
|| ||||||||||||| ||||| |||||||| | | ||| |||| || || | || |
Sbjct 1386 TTCTACCAACAGCATCTATTTCATCAATGAATAATATACAGGGAGCATGTTTCCGAGCCA 1327
Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144
| | || | || || || | || | |||| ||||||| ||||||||| ||| || |
Sbjct 1326 TAGAGAACATATCCCTGACTCTAGAGGGACCAACACCAACAAACATTTCTAAAAACTCTG 1267
Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
|| | |||||| ||||| | ||||| || || |||||| ||| | || | ||| |
Sbjct 1266 AACCAGATACTGTTATGAAGGGAACATTAGCCTCTCCTGCTGTTGCTTTAGCTAAAAGAG 1207
Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCA 289263
| ||||| |||||||| ||||| ||||| | |||| || || | ||| || || ||
Sbjct 1206 TTTTACCAGTTCCAGGGGGTCCTGTTAATAAAGCTCCTTTAGGAATTTTAGCTCCTAGGT 1147
Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323
| |||| | || |||| | || ||||| | ||||| |||| || |||| ||| ||
Sbjct 1146 CA-ATATACTGCTGAGGGTTTTTCAAAAAGTTTACAAATTCCATAATTTCAATTTTAGCT 1088
Query 289324 TCATCACATCCTGCTACATC 289343
|| ||||| || || |||||
Sbjct 1087 TCCTCACAACCAGCAACATC 1068
>seq5177
Length=4331
Score = 138 bits (152), Expect = 3e-27
Identities = 623/973 (64%), Gaps = 32/973 (3%)
Strand=Plus/Minus
Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458
|||||| || || | ||||||||| |||||||||| || || ||||| ||| |
Sbjct 3041 AAATGTATCTGCCATACCCTGAACACCAATACCGATAGGACGGTGCCTCATATTTGAAGT 2982
Query 155459 GCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517
||| |||| | || ||||| || |||||||| | || ||||||||| | ||
Sbjct 2981 TTTTG-CTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTCA 2923
Query 155518 ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACA 155577
| ||| || | ||| |||||| | | |||| |||| ||| |||||||
Sbjct 2922 CAATCTTAGTGATTTCTTTTAATTTTTTAAAACTAAATCGATTATTTTCA---ACAAACA 2866
Query 155578 TACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTA 155637
| ||| | || || || || || || || || || | || |||||| |
Sbjct 2865 TGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCA 2806
Query 155638 CAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTAC 155697
||| |||| ||| || || || || || ||||| | ||| || || ||| || |
Sbjct 2805 CAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTC 2746
Query 155698 TGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAA 155757
|||| ||||||||||| || | || ||||| || || ||||||| || || || | ||
Sbjct 2745 TGTTGCAAGCATCCTTATACAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAA 2686
Query 155758 T---CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC----TTCCGAC 155810
| ||| ||| | || | || | | || ||| ||| || |||
Sbjct 2685 TAGACTT---CCATAACTCTTGAGCTCTGA----CTCGTTTTATAAACCGTTTTTCTTCT 2633
Query 155811 TCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868
|||||||| |||||| || |||| | ||||| |||||||| ||| || ||||| |
Sbjct 2632 TCATATTTGGCATATAGGGC-TTCGA-ATTCCTCTCCGTAACAGTCAGCGAGGCCAGGAC 2575
Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATAC 155926
| | || || || | || |||| || || || || || || |||||| |
Sbjct 2574 AATCATGAGGACACATGAGACTCCAATCTTCAT--CCTTTTCTACCCTTTTCATAAACAG 2517
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGAT 155985
||| ||| | |||||| || || || || || | || || | || ||| |
Sbjct 2516 ATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-T 2458
Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
|||| || |||||||| || || || | ||| ||||| | || || ||||
Sbjct 2457 TCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAA 2398
Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
| ||| | ||| ||||| ||||||||||| | ||||| || ||| | || |
Sbjct 2397 ATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTC 2338
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
| ||| || | | |||||| ||| ||||| || || |||| || || |
Sbjct 2337 TCAACATTGGCACTAGACCATTCGAAACCCCATTAGTGCCAGCTATATAAGACCCCTGGG 2278
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222
| || ||| |||||| || || ||||| | ||||||||||| || ||||
Sbjct 2277 CTCTAATGCAATGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATT 2218
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
|||| ||||| ||||||||||||||| ||| |||| ||| | || || |||| |
Sbjct 2217 GTTTTAAAGTATCGAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAGG 2158
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342
| | || || || ||||| |||| ||| |||||||| ||||||| ||||||
Sbjct 2157 AGGAAAGCTGTGGCCGCGGTGTAGCAGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAAT 2098
Query 156343 ACTTATTAGACAT 156355
| || | |||||
Sbjct 2097 ATTTCTCTGACAT 2085
>seq54952
Length=6343
Score = 116 bits (128), Expect = 1e-20
Identities = 187/269 (70%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| |||| |||||||||||| ||||||||| || |||||||| || |||
Sbjct 2013 TCCATAGCCTTTATTAGACGACGCTGAATGTAACCAGTTTCAGCAGTTTTTACCGCAGTA 1954
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
||||| ||||| ||||||| ||||| || ||||| | | ||| ||| | ||
Sbjct 1953 TCAATGAGACCTTCACGACCTCCCATGGCGTGGAAATAAAACTCAGAAGGTGTCAAGCCA 1894
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754
||| | || | || |||||||| | | || || || ||| ||| | ||
Sbjct 1893 GCAAGGTATGAATTTTCGACGAAACCTCTAGATTCTGGACCATAATCGTCTTTGATGAAA 1834
Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814
||||||| || || || | | ||| | || ||||||||||| ||||||||||| ||
Sbjct 1833 TGTGGCAATGTTCTTTTACGAAAACCGAAAGGAATACGCTTTCCTTCAACGTTCTGTTGC 1774
Query 302815 CCCAGGCACGAAATCATCTGCGAAATATT 302843
|| | || | ||| | ||| || || ||
Sbjct 1773 CCTACACAAGCAATAACCTGTGAGATGTT 1745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1465730836682838
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |