Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq39946 98.7 1e-15 seq191159 82.4 1e-10 seq54952 82.4 1e-10 >seq39946 Length=3916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/245 (71%), Gaps = 13/245 (5%) Strand=Plus/Plus Query 192954 TATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGACGATT 193011 |||||||| |||||||| || || ||| ||| | || || ||||| | ||||| || | Sbjct 2330 TATCCACACAAACCCCTGGTCACAACAAGATCTATGGAATATTTACGAT-TTAGA-GAGT 2387 Query 193012 ATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAG 193071 || |||||| ||| |||||||||| || || || ||||| || |||||||||| Sbjct 2388 TGCCTGCTGGTATCAATTCTATTGTTGCAATTTTATGTTACACTGGATACAATCAAGAAG 2447 Query 193072 ACAGTATTATTTTAAATAAAGCTT---CTATTGAAAGAGGATTATTTGGTACTATAACTT 193128 | ||| | ||||||||| |||| || ||||||||||||| ||| | | || || Sbjct 2448 ATAGTGTCATTTTAAAT---GCTTCAGCTGTTGAAAGAGGATTCTTTAGATCAGTATTTT 2504 Query 193129 ATAATACATATACAGTTGAAGAAACAAA---AAATGGAATTATAGAAGAAAAAATAGATA 193185 | | | |||| || | |||| |||| || |||| | ||||||| || | || | Sbjct 2505 ACCGTTCTTATAAAGATTCAGAATCAAAAAGAATTGGAGATCAAGAAGAACAATTTGAAA 2564 Query 193186 TACCT 193190 |||| Sbjct 2565 AACCT 2569 >seq191159 Length=871 Score = 82.4 bits (90), Expect = 1e-10 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 168653 AGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA 168712 ||||||| | ||||| ||||||| ||||||||||||||| |||||| ||||| |||| Sbjct 293 AGGTGATCTTGGTCCTGTTTATGGCTTTCAATGGAGACATAGTGGAGCTAAATATGTTGA 352 Query 168713 CTGTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACT 168770 || | | || |||| | ||||||||| | || ||| || | | | |||||||||| Sbjct 353 -TGCGAAAACCAATTATGCAGGACAAGGAATTGATCAAATACATAACATTATAAATACT 410 >seq54952 Length=6343 Score = 82.4 bits (90), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 |||||| ||||||||| | ||| ||||||||||||| |||||||| || ||| Sbjct 848 ACATTTCGTATGAATTTGAGTTGCACTTCGCCATATAATGCTGACTTTGATGGCGACGAA 907 Query 52017 ATGAATTTACATGTTCCTCAATCATATGGA 52046 |||||||||||||| |||||||| |||||| Sbjct 908 ATGAATTTACATGTACCTCAATC-TATGGA 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632614864816720