Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21365 203 3e-47 seq5177 96.9 3e-15 seq218964 82.4 7e-11 seq117972 82.4 7e-11 >seq21365 Length=2821 Score = 203 bits (224), Expect = 3e-47 Identities = 348/500 (70%), Gaps = 4/500 (1%) Strand=Plus/Minus Query 24794 GTGGCGGCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTG 24853 |||| || ||||| || || |||||||| ||||| | | || ||||| || | Sbjct 1324 GTGGGCGCCTACTTCGTAGAATGGGGTGTCTACCCTAGGAAATTCCCCGTGGATCGTATA 1265 Query 24854 CCCGCGCCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGC 24913 || || || || | || |||||||| |||||| | ||||| |||||||| | ||| Sbjct 1264 CCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGC 1205 Query 24914 ATCAACGATGCGCTAAAAACTGTGCCG-GGCAGCTTCGAGGCGCTGCAACGATCGTGCGC 24972 || || ||| ||| |||| | | ||||| ||| | || |||||||| || || Sbjct 1204 ATAAATGATA-GCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAG 1146 Query 24973 CGGCCGCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCA 25032 |||||| | |||||||| || | ||||||||||| ||||| || |||| ||||| || Sbjct 1145 CGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACA 1086 Query 25033 GAAAGGCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCT 25092 ||||| |||| | ||||||||||| ||||| |||||||||||||| | ||| | || Sbjct 1085 AAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACT 1026 Query 25093 GAAGCGCGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGA 25152 || | ||| ||| | | || | || |||||||| || || |||||||| |||| Sbjct 1025 AAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGGACGCTTGCCGA 966 Query 25153 CCCGTTCTTCCACATGCACGACAAGGCGGCGCGCCAGACG-TTTATCGACTCGGTGCAAG 25211 || |||||| | ||||| | | | ||| ||| | | || || | | Sbjct 965 TCCTTTCTTCTTTTTAGTTGACAAATCTAAAAG-AACACGATTTGTGCAGTCAGTAAAGG 907 Query 25212 AGTACCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCG 25271 ||| ||| | || ||||| ||||| || || || || |||||||||||||||| || | Sbjct 906 AGTTTCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTG 847 Query 25272 GCAAGGGCGCCAACCCGGAC 25291 | || || || ||||| ||| Sbjct 846 GTAAAGGTGCTAACCCTGAC 827 >seq5177 Length=4331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 437/685 (64%), Gaps = 16/685 (2%) Strand=Plus/Minus Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||||| |||||||| || || ||||||| | ||| || || || | || || ||||| Sbjct 3367 GTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 3308 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 |||| || || || || |||||||| | ||| ||| || || || | ||| Sbjct 3307 GGTGCTATCAATAGAGAATTACGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCC 3248 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||||||| || | || || ||||||||| || ||||| || || || ||||| Sbjct 3247 CAGTCCCAAAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTA 3188 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 || || || || | || | |||||| | || | | || | ||| || || || Sbjct 3187 GCTGGACTTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCT 3128 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || | || || || ||||| || || ||||| || || || || ||| Sbjct 3127 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCA 3068 Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 |||||||| || || | || | |||||| | || || | ||||| || || | || Sbjct 3067 CTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCG 3008 Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC---GAGCGGATAGTGGTTGCGG 148727 || || ||||| | || || || | ||| || || ||||| ||| Sbjct 3007 ATAGGACGGTGCCTCATATT--TGAAGTTTTTGCT-TCAGGGACAGGATAAAAGTTAACA 2951 Query 148728 TCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTCTGCGCA----GCAATT 148782 || |||| |||| | ||| | ||| | ||| || | |||| | || Sbjct 2950 TCAATGACTTTGTTTAAATTTTGAGTCACAATCTTAGTGATTTCTTTTAATTTTTTAAAA 2891 Query 148783 CAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 | |||||| || | || || | ||| ||| | || || || || || ||||||| Sbjct 2890 CTAAATCG--ATTATTTTCAAC-AAACAT--GTTAAGTGCTATGGAAGCAAGGTTGCACA 2836 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGA 148902 | ||| ||||| | |||| | || | ||| | ||| |||||||| ||||| | Sbjct 2835 CTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 2776 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | ||| | || |||||||| ||||| |||||||| || ||||| |||| ||| || | Sbjct 2775 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTGCAAGCATCCTTATACAACATATATG 2716 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTC 148987 || ||||| ||||| || | ||| Sbjct 2715 GTGTACCAGTCTCCACTTGAGCTTC 2691 >seq218964 Length=932 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| | || || || || ||||| |||||||||||||| ||| Sbjct 785 TGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT-TGAAT 727 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | |||| ||||||| || || || || | || | |||||| || Sbjct 726 TTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTACC 667 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 666 CGTGAGTGTTTTCACGAAAATCTGCAT 640 >seq117972 Length=685 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || || ||||||||| | ||| ||| | || || | Sbjct 67 AAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAAAGAGTGCGACCA-TCTTCCAA 125 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || || |||||||| || || |||||||| || ||||| ||| Sbjct 126 TTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGAT 185 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | |||| || || | ||| ||||| || | || | ||| || | Sbjct 186 -TTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTTTC 244 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| || ||||||||||| Sbjct 245 CAGTTAGGGTTTTAACAAAAATCTGCAT 272 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | || || ||||| || || ||||| || | ||| |||| || || | Sbjct 295 AAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAA--GTGTACGACCATCTTCCA 352 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||||| |||| || || || || || ||||| |||||||| ||||| || Sbjct 353 ATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGA 412 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || ||| | | |||| ||||| | || || || || | || | ||||||| Sbjct 413 TTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAAAGTAATTGTTTTGC 472 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| || ||||| ||||| Sbjct 473 CAGTAAGTGTTTTAACAAAAATTTGCAT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481470354183760