Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21365 154 1e-32 seq117972 109 5e-19 seq218964 100 3e-16 seq2512 95.1 1e-14 >seq21365 Length=2821 Score = 154 bits (170), Expect = 1e-32 Identities = 368/546 (67%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 24784 GAAAATAACAAGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGA 24842 ||||| || || | ||| || ||||||| || ||| |||| | || |||||||| || Sbjct 1363 GAAAAAAATAAACCATTCAAGCAAACATCTGGA-AAAGTTGTGGGCGCCTACTTCGTAGA 1305 Query 24843 GTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCA 24902 ||||| || || | || | || |||| || | || || ||| | | || Sbjct 1304 ATGGGGTGTCTACCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCA 1245 Query 24903 CTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAAC 24962 ||||| || | || | || || |||||||| || |||||||| || || |||| Sbjct 1244 TTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGCATAAATGATAG-CTTAAAAG 1186 Query 24963 AGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGG 25021 || || || ||||| | || ||||| || || || ||| || || || || || | Sbjct 1185 AGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAGCGGCCGTGAGGACTTCAAAG 1126 Query 25022 TAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGA 25081 | | || ||||| || ||||| || | || ||||| || ||||| | || | |||| Sbjct 1125 TCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGA 1066 Query 25082 ACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACT 25141 ||||||| ||||||||||||||||| ||||||||| || ||| ||| || | | Sbjct 1065 ACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAAT 1006 Query 25142 TGAAGGTGCTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCTTTCACATGCAT 25200 ||||| | || | ||||| || || ||||| |||| | ||||| ||||| | | Sbjct 1005 TGAAGATTCTTCCCTCGATTGGTGGGTGGACGCTTG-CCGATCCTTTCTTCTTTTTAGTT 947 Query 25201 GACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAA 25259 ||| | | | ||| || | | || || |||| |||||| | || ||||| Sbjct 946 GAC-AAATCTAAAAGAACACGATTTGTGCAGTCAGTAAAGGAGTTTCTCCTAACATGGAA 888 Query 25260 GTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCA 25319 || ||||| || || || || || ||||||||||| || || ||||| || || ||| | Sbjct 887 ATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTGGTAAAGGTGCTAACCCTGA 828 Query 25320 CGTCGG 25325 | |||| Sbjct 827 CCTCGG 822 >seq117972 Length=685 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | || ||||||||||||||||| ||| | || || | Sbjct 58 CGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAAAGAGTGCGACCA 117 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || ||||| | | |||| || ||||| ||||| || || ||||| ||||| Sbjct 118 TCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGGGATGCCCTCTTTG 177 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | |||||| | || |||||||| | || | Sbjct 178 TCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATG 237 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | ||||||||||| Sbjct 238 GTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 272 >seq218964 Length=932 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | || |||||||||||||||||||| | || || Sbjct 854 CGCAATACCAGGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCTGAAAGAGTGCGGCCG 795 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || || | | || | ||| |||||||||||||| |||||||| || Sbjct 794 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 735 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||| |||| || || ||||| | || | Sbjct 734 TCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCAACTTCCAAAGTAATG 675 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || ||||| | |||||||||||| Sbjct 674 GTTTTACCCGTGAGTGTTTTCACGAAAATCTGCAT 640 >seq2512 Length=3386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 115649 CGGCTTCTATTACACGGGCGTCGGTGACGAAGTGCGTTGCGCTTTCTGCAAAGTGGAGAT 115708 ||||||||||||| |||| |||||| ||||| || ||||| || || ||||| || || Sbjct 1497 CGGCTTCTATTACCTGGGCCGCGGTGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAAT 1438 Query 115709 TATGAGATGGCAGCCCGGAGACGATCCATTGACGGACCACAAACGATGGGCGCCTCAGTG 115768 ||||| |||| | || |||||||| | ||||||| |||| |||||||| ||||| Sbjct 1437 TATGAAATGGGTCGCGGGCGACGATCCCGCTAAGGACCACCAACGGTGGGCGCCCCAGTG 1378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474688228706640