Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq21365 347 1e-90 seq5177 123 2e-23 seq117972 104 2e-17 seq153336 93.3 4e-14 >seq21365 Length=2821 Score = 347 bits (384), Expect = 1e-90 Identities = 920/1388 (66%), Gaps = 38/1388 (3%) Strand=Plus/Minus Query 59754 TCTAAAGGCGGTCGATATAAAAATGACCGTCAAACTATGTAATTCGGACGGATGCACTTC 59813 || ||||| || |||| ||| |||| || |||| || ||| ||||| |||| ||| Sbjct 1495 TCGAAAGGTGGAAGATACCAAA-TGACAGTGGAACTTTGCAATGAAGACGGCTGCAGTTC 1437 Query 59814 GAGTCAGCCGGTCGATGTTGTCATTGCAGATACCGACGGCTCTCATCTCGCTCCGTTATA 59873 || | || ||| ||||| | || ||||| || || |||| | ||| || | Sbjct 1436 AAGCGATCCCACCGAAATTGTCGTGGCCGATACTGATGGAAGTCATTTACTTCCTTTGGA 1377 Query 59874 TTATGAATATCAAGAACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGC 59933 ||| || |||| || | || ||| ||| | |||| ||||| || | Sbjct 1376 ATATACATTGGGAGAAAAAAATAAACCATTC--AAGCAAACATCTGGA-AAAGTTGTGGG 1320 Query 59934 CGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCAC 59993 ||| || || || ||||||||||| || ||||| || || || || ||||| | || | Sbjct 1319 CGCCTACTTCGTAGAATGGGGTGTCTACCCTAGGAAATTCCCCGTGGATCGTATACCTAT 1260 Query 59994 TCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAA 60053 |||||||| | ||| | || || || |||||||| || |||||||| ||||| || || Sbjct 1259 ACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGCATAAA 1200 Query 60054 CGACAGTCTTAAAACC-ATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTC 60112 || || ||||||| || || |||||| |||| || || || || ||| || | Sbjct 1199 TGATAG-CTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAGCGGCC 1141 Query 60113 GAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAAC 60172 | || ||||| ||||| ||||| |||||||||||||| || | || ||||| |||||| Sbjct 1140 GTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAG 1081 Query 60173 AAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAAC 60232 | | | | |||||||| || |||||||| || || || ||||||||| || |||| Sbjct 1080 GATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAAC 1021 Query 60233 TGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGT 60292 || || | | || | | |||||||| || || ||||| || ||||||| | Sbjct 1020 AAGCCCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGGACGCTTGCCGATCCTT 961 Query 60293 TCTTTTACTTTCACGATACGGATAAACGA--AAGATTTTTGTAGATTCTGTCGTGGAGTT 60350 |||| | || || | |||| || | ||||| || || || || |||||| Sbjct 960 TCTTCTTTTTAGTTGACAAATCTAAAAGAACACGATTTGTGCAG--TCAGTAAAGGAGTT 903 Query 60351 TCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAA 60410 ||| | || |||||||| ||||| ||||| || ||||| ||||||||||| || || || Sbjct 902 TCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTGGTAA 843 Query 60411 AGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACACCATTCTGTT 60470 |||||| || || || | || | | ||| ||| | || || | | || | Sbjct 842 AGGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTTGAT 786 Query 60471 GAAAGATTTACGCGAGGCGCTAGATCGATTAACCCTC-GAAACGAATCGAACG---TACG 60526 |||||| ||||| ||| || ||||| | | ||| | | |||| | | | |||| Sbjct 785 GAAAGAATTACGTGAGATGC----TCGATGAGCTCTCAGCTAAGAATGGCAAGAAATACG 730 Query 60527 AGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACACCGCTG 60586 | ||||| || |||||| | || || |||||| || || |||||| | | Sbjct 729 AATTGACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGG 670 Query 60587 CTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTGGTCGA 60646 ||||| | ||| | ||| ||||| ||||||| || || || || ||||||||||| | Sbjct 669 CTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAGCCTGGTCAA 610 Query 60647 ATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGAACATT 60706 || | ||| || |||| || | | ||||| ||| | | ||||| || ||| || Sbjct 609 ATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAATCCCAAGGAAACTT 550 Query 60707 ATACTACCGATTTTGCCGT-TCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaaaaaaTT 60765 | || | || || | || | || | | || ||| | ||| || ||| Sbjct 549 ACACATCTGACTTCGGAGTAAAATACT-TGTTGGCACAGGGAGTGAATCCTAAGAAGATT 491 Query 60766 ATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTGACGAT 60825 | | || || |||||||| ||||| || ||||| ||||| |||| || || Sbjct 490 GTATTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGATT---ACGAAGAC 434 Query 60826 AATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACGGAGTC 60885 || | ||| || | || | || | ||||| |||||||| || ||| |||||||||| Sbjct 433 AACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACGGAGTG 374 Query 60886 GTCGACTATAGAGAGATTTTCAAT-AATTTCGTC--GCCAATAACCCGATGGAAT---AT 60939 || || || ||||||||| ||| || || || | ||| | ||||| || Sbjct 373 GTTGATTACAGAGAGATTGCGAATGAAATTGCTCAAGGCAA------GTGGGAATTTCAT 320 Query 60940 TACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCTCATCACT 60999 ||||| || || |||| | || ||||| | || || || || || | || Sbjct 319 TACGACAATGTCGCCCAAGCTCCTTATGTCTTCAGACCATCAACTGGAGACCTTGTAACC 260 Query 61000 TACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTATAGCTTGGGT 61059 || |||||| || | || ||| | || || | |||||||| | | | | ||| Sbjct 259 TATGACAATGCTAGATCAGTTATTGAAAAGGGTAAATATGTGAGAAATAACAAACTAGGT 200 Query 61060 GGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAACGCCATGAACAGC 61119 ||| | || |||||||| ||||||||||||||||| || || || |||||||||| Sbjct 199 GGTCTCTTTGCTTGGGAAATCGACGCCGACAACGGTGATCTACTGAATGCCATGAACATG 140 Query 61120 GGTCTCGG 61127 |||||||| Sbjct 139 GGTCTCGG 132 >seq5177 Length=4331 Score = 123 bits (136), Expect = 2e-23 Identities = 662/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 136972 AGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTA 137031 ||||| || || ||||| || |||| || |||| ||||| | | ||| | ||| Sbjct 3427 AGATGATGGTTCACTACAGGAAATTCTCCAGATAAAACTCTTCTTTGGTAAATATTTGAT 3368 Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 || || || || || ||||| |||| || | ||| |||||||| | || |||||||| Sbjct 3367 GTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 3308 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 || ||||| | ||||| || ||||| ||| || | | || ||||| | | Sbjct 3307 GGTGCTATCAATAGAGAATTACGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCC 3248 Query 137152 CAGTTCCACAGAT-TGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCG 137210 |||| ||| || | ||| || ||| | ||||||| |||| |||| | | || | Sbjct 3247 CAGTCCCAAAGGTCTGTAGGA----GTTTTGTTCCACATATCATACTGGAGGATACCTTG 3192 Query 137211 ACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATAC 137269 || || |||||| || ||| | |||| || | | |||| || | |||| || Sbjct 3191 GCTAGCTGGACTTCCTTGATATGTGCTGTATGCACCTT-CTTTTTCTGCTAATTCACAAC 3133 Query 137270 TCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTT 137329 | ||| ||| ||||| ||||| ||||| | |||| | ||| | | | |||| Sbjct 3132 TAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTT 3073 Query 137330 CTTGGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGA 137389 | || ||||| || || || | | || | |||||| | || |||| ||| | Sbjct 3072 TCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAA 3013 Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTG 137449 |||||||||| | ||| | | |||||| ||| || | | ||||||||||| Sbjct 3012 TACCGATAGGACGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAA 2953 Query 137450 CGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGA 137509 | || || | | | || | ||| | ||| || | | | | || | | || | Sbjct 2952 CATCAATGACTTTGTTTAAATTTTGAGTCACAATCTTAGTGATTTCTTTTAATTTTTTAA 2893 Query 137510 AATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGC 137569 || || | ||| || | | |||| | || | || || || || | ||||| Sbjct 2892 AACTAAATCGATTA------TTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGC 2839 Query 137570 ATACGGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTT 137628 | || ||| ||| | | || | ||||||| |||| || | |||||||||||| | Sbjct 2838 ACACTGCCACTTCATCTTCTGAAG-TGTATTGCACAACCTCAGTGCAAAGATTGCTACAT 2780 Query 137629 CGGATCACTCCCAA-ATTCTTTTGATT-GTTTTTCTCGTTGACGTGATCTTTATATATCA 137686 || | | |||| ||| |||||||| | ||||| |||| ||| ||||| | || Sbjct 2779 TTAAT-AGTGCCAAGATTTTTTTGATTACTCTTTCT-GTTGCAAGCATCCTTATACAACA 2722 Query 137687 TATACGGAGTTCCGGTTTCGACTTGAGTCTCAACAAT--TTTTCTGTGAAGATCCAACGC 137744 |||| || || || || || ||||||| || | ||| ||| | | || || Sbjct 2721 TATATGGTGTACCAGTCTCCACTTGAGCTTCTATAATAGACTTCCAT--AACTCTTGAGC 2664 Query 137745 CATAATTTGTTCTCTAAAC---TTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAA 137801 | | | ||| | ||||| || ||| ||||| | | | ||||| || || Sbjct 2663 TCTGACTCGTTTTATAAACCGTTTTTCTT---CTTCATATTTGGCATATAGGGCTTCGAA 2607 Query 137802 TTTTTCGCCCATAACAATC-GTTAGACCCGGACACTCGTCGGGACACATCA-ACGACCAT 137859 || || || ||||| || | || || ||||| || | |||||||| | || | || Sbjct 2606 TTCCTC-TCCGTAACAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAT 2548 Query 137860 TTTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGG 137919 ||| ||| | || ||||||| ||| |||||| || |||||| |||| ||| || Sbjct 2547 CTTCATCCTTTTCT-ACCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGT 2489 Query 137920 TCGCGAGCCTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTA 137979 || | ||| |||| ||||| || | || ||||||||| || || ||| || Sbjct 2488 TCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATG 2429 Query 137980 TCAGCATGCCAAGGCTC 137996 || |||||||||||||| Sbjct 2428 TCCGCATGCCAAGGCTC 2412 >seq117972 Length=685 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| ||||| | || || | ||||| ||| || Sbjct 272 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 213 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | |||||| ||||| || |||||||| || || || |||||| Sbjct 212 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 153 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | || || ||| | ||||||| | | | | | ||||||||| Sbjct 152 CAGCGCCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCCGATTACAAC 93 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| || ||||||| || || Sbjct 92 ATTCAAAAAGAATCTACTCTTCATTTGGTATT 61 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || || ||| | || || | ||||| |||||| Sbjct 500 ATGCAAATTTTTGTTAAAACACTTACTGGCAAAACAATTACTTTAGAAGTTGAAGCCTCT 441 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | ||||| ||||| || ||||| || || || || ||||| Sbjct 440 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 381 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| || ||||| ||| | ||||||| | | | | || ||||| Sbjct 380 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAAC 321 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||||||| || | |||||||| | | || ||||| |||| Sbjct 320 ATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGGTGGAA 272 >seq153336 Length=250 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| |||| |||||| | || || | ||||| ||||| Sbjct 232 ATGCAAATTTTTGTAAAAACACTAACTGGAAAAACTATTACTTTAGAAGTGGAAGCTTCT 173 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||| ||| || || || || || || || || || Sbjct 172 GATACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 113 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 |||||| | |||| || ||| || ||||| ||||||| | | |||| || || | Sbjct 112 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACACTGTC--GGACTATA 55 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | || || || ||||| || | || |||||||| Sbjct 54 ACATCCAGAAGGAATCTACTTTGCACTTAGTGTT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443298588751680