Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq197295 98.7 8e-16 seq229024 84.2 2e-11 seq39946 84.2 2e-11 >seq197295 Length=1118 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||| ||| ||||| |||||||| || ||||||||||| | | | || | Sbjct 513 GACTTGGCAGATTGGGAGACATTAAAAGATTGCGAGAAACATTTTATCAAACAT--GTCT 570 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || ||||| || || || || || ||||| || ||||| || || ||| Sbjct 571 TAGCATTCTTTGCGGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCTCGC 630 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || || ||||| ||||||||||| || |||||| Sbjct 631 AAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATG 690 Query 43974 TTCATTCGGAAATGTAC 43990 |||||||||| |||||| Sbjct 691 TTCATTCGGAGATGTAC 707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 || ||||| ||||||| ||||||||||| ||||| |||||||| | || || |||||| Sbjct 308 TTCCCAATCCAATATCCCGACATATGGCAGATGTATAAAAAAGCTGAAGCATCGTTTTGG 367 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAA 43794 || ||||||||||| || || |||| Sbjct 368 ACTGCAGAAGAAGTAGACTTATCTAA 393 >seq229024 Length=315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||||||||||||||| |||| || | |||||||| ||| || |||| ||| Sbjct 101 CCCAAAATTGTAAATGGTCCACAAATTTTGGACAAATATGTCGGTGAAAGTGAAGCGAAT 42 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACG 19529 | | | ||||||||||| |||||||||||| | ||||| Sbjct 41 ATTAGGAGATTGTTTGCTGATGCTGAAGAAGAAGAGAAACG 1 >seq39946 Length=3916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| ||||| | ||||| ||||||||||| | |||||| ||| || || Sbjct 3007 AATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGCGTTAAGCCCTC 2948 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGG 115149 ||| |||||||| || | || ||| || |||||||| |||||||||||| | Sbjct 2947 ACATGTAAACGGCATATC-TTCTTGTCGATATTGGATTCCACATGTTCCTTTTTGACCAT 2889 Query 115150 TAAACGATGCAAATTTATCACCAAT 115174 | || ||||| ||||| ||||| Sbjct 2888 GACGAGAAGCAAACTTATCCCCAAT 2864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395892484357870