Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq117972 95.1 9e-15 seq153336 89.7 4e-13 >seq117972 Length=685 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| ||||| || ||||| || ||||| | || || ||| | | Sbjct 273 AATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTC 214 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| |||||||| || | || || Sbjct 213 TGATACTATTGAAAAT--GTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGAT 156 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| || || |||||||| || | |||| | ||||||||| Sbjct 155 CAGCAGCGCCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCCGATTAC 96 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||||| ||| | |||||||| |||||| | ||||| || Sbjct 95 AACATTCAAAAAGAATCTACTCTTCATTTGGTATTGCGTCTTCGTGGTGG 46 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| |||||||| ||| ||||| | || || ||| | | Sbjct 500 ATGCAAATTTTTGTTAAAACACTTACTGGCAAAACAATTACTTTAGAAGTTGAAGCCTCT 441 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||||| ||||||||||| |||| || | Sbjct 440 GACACAATTGAAAAT--GTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATC 383 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || || |||||||| || | || | | || || |||| Sbjct 382 AACAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACA 323 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||||||||| ||||||||||| || | ||||| Sbjct 322 ACATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTT 283 >seq153336 Length=250 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| || ||||| ||| |||||| | || || ||| | Sbjct 233 AATGCAAATTTTTGTAAAAACACTAACTGGAAAAACTATTACTTTAGAAGTGGAAGCTTC 174 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || |||||||| || || ||| || ||||| ||||| |||| Sbjct 173 TGA-----TACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCA 119 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||| | || ||||| |||||||| ||| |||| || | |||| |||| || Sbjct 118 GACCAACAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACACTGTCGGAC 59 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || |||||||| || || |||||||| || || |||||| Sbjct 58 TATAACATCCAGAAGGAATCTACTTTGCACTTAGTGTTGCGT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354462505599498