Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq143699 109 5e-19 seq117972 95.1 1e-14 >seq143699 Length=2008 Score = 109 bits (120), Expect = 5e-19 Identities = 223/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 14715 AATTTGATAGCTACAACGATTACGTGGTGGCGGCGACATATTTTGACGGAAAGAAGGTGA 14774 ||||||| | ||||| |||||| | ||||| | |||||||| |||| | | Sbjct 1719 AATTTGACAAATACAATGATTACATTGTGGCCTTAAATTATTTTGATTCAAAGGCTATCA 1660 Query 14775 ACTACAACAGCGGTTTGTTTTACTATGTTCTGTGGAAATTGTGCAGCGCCAAAAAGTGGA 14834 | ||||| | ||||||||||| ||||| |||||||| | || | ||||| |||| Sbjct 1659 AATACAATAAGGGTTTGTTTTATTATGTACTGTGGAAGATATGTGATGGTAAAAAATGGA 1600 Query 14835 TGAACCAAAATGTGCTTGACCAATT--TTGGAAATACGTTAAACTTCGCTTACAAAACAC 14892 || ||| |||||| | || |||| | | ||| ||||| | |||| || || Sbjct 1599 TGGACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGGCGTG-TTACCGAA-AC 1542 Query 14893 TACATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACTACT 14952 | |||| | | ||||| | || |||||| ||||||| || |||| ||||| | Sbjct 1541 AAAATGCTATATTGGTCTGACCTCTCTTCCTTTGGACCCCTTAATACAAACGTCACTGCC 1482 Query 14953 AACAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATTACA 15012 |||| || ||||| ||||| || | || || ||||||||||| |||| | | | Sbjct 1481 TGCAGCGCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATGACGTGTA 1422 Query 15013 TTACACCAATGAAAGACTGCGACTTTAT 15040 |||| |||| ||||| ||| | |||| Sbjct 1421 TTACTCCAAAGAAAGGTTGCAAAATTAT 1394 >seq117972 Length=685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || |||||||| || || ||||||| ||| || || | Sbjct 58 CGCAATACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAAAGAGTGCGACCA 117 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || | || || || ||||| ||||| |||||||| || |||||| | || |||||| Sbjct 118 TCTTCCAATTGCTTACCAGCAAAGATAAGGCGCTGCTGATCAGGTGGG-ATGCCCTCTTT 176 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||| | | | | ||||| | ||||| |||| || || Sbjct 177 GTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAAT 236 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || ||||||||||| || ||||| Sbjct 237 GGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427855850028662