Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hierax_20[genbank_20GCA_5F900068475.1_202017-04-25] 322,774 sequences; 210,868,349 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq218964 154 1e-32 seq117972 141 6e-29 seq153336 95.1 8e-15 seq131538 86.0 4e-12 >seq218964 Length=932 Score = 154 bits (170), Expect = 1e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| |||||||| ||||| || ||| | |||||||| | Sbjct 637 AAAATGCAGATTTTCGTGAAAACACTCACGGGTAAAACCATTACTTTGGAAGTTGAACCT 696 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| ||||| |||||| ||||| ||||| | || |||||| Sbjct 697 TCCGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 756 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || || || || ||| ||||||||| |||||| | || ||| Sbjct 757 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCAGACTAC 816 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| |||||||| || || Sbjct 817 AACATTCAAAAAGAATCTAC 836 >seq117972 Length=685 Score = 141 bits (156), Expect = 6e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||||||||| || ||||| || || ||||| ||||| || || | Sbjct 273 AATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTC 214 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| ||||| ||||| |||||||| || | || || ||||| Sbjct 213 TGATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCA 154 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || ||| ||||||| | |||||| | ||||||||| Sbjct 153 GCAGCGCCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCCGATTACAA 94 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||| || || | ||||| || || Sbjct 93 CATTCAAAAAGAATCTACTCTTCATTTGGTATT 61 Score = 132 bits (146), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || || ||||| || ||| | |||||||| || | Sbjct 500 ATGCAAATTTTTGTTAAAACACTTACTGGCAAAACAATTACTTTAGAAGTTGAAGCCTCT 441 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||||| ||||||||||| | || ||||||||| Sbjct 440 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 381 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || ||| | || || || ||||| ||| ||||||| | || |||||| || |||| Sbjct 380 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTT--CTGACTACA 323 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| |||||||| || || || |||||||| Sbjct 322 ACATCCAAAAAGAATCTACTTTGCATTTAGT 292 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || ||| || |||||||||||| | || ||||| ||| Sbjct 668 GACACTATTGAAAATGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAA 609 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||||||||||| | || || || ||||| || Sbjct 608 CAGAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAAT 549 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || |||||||||| || Sbjct 548 ATTCAAAAGGAATCTACTCTACATTTAGTATT 517 >seq153336 Length=250 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| || || |||||||| || ||| | ||||| || | | Sbjct 233 AATGCAAATTTTTGTAAAAACACTAACTGGAAAAACTATTACTTTAGAAGTGGAAGCTTC 174 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | |||| | |||| |||| | || ||||| ||||| | || ||||| | Sbjct 173 TGATACAATCGAAAATGTTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCTCCAGACC 115 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | || || || ||||| || ||||||||||| | ||||| | || || | Sbjct 114 AACAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACACTGTCGGACTATA 55 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| || || || || || || || ||||| || Sbjct 54 ACATCCAGAAGGAATCTACTTTGCACTTAGTGTT 21 >seq131538 Length=717 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 23681 AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 |||| |||| |||||| || ||||||||||| | || ||||| |||||| | || | Sbjct 2 AAATGTTAAGGCAAAAA-TTCAGGACAAAGAAGGCATTCCTCCAGACCAACAGAGGTTGA 60 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | |||||||| || ||||| ||||| | ||| || ||| |||||||| || || |||| Sbjct 61 TTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTATCTGATTACAATATTCAGAAAG 120 Query 23801 AGTCCAC 23807 | || || Sbjct 121 AATCTAC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336679935089192