Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11297 553 2e-152 seq29470 86.0 7e-12 >seq11297 Length=12984 Score = 553 bits (612), Expect = 2e-152 Identities = 1113/1625 (68%), Gaps = 47/1625 (3%) Strand=Plus/Minus Query 52788 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 52847 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 12755 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 12696 Query 52848 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGG 52907 |||||||||| ||||||| || | |||| ||| ||||| || || ||||| Sbjct 12695 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 12636 Query 52908 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 52967 ||| | || | || | ||| || || | ||||||||||||||| || || ||||| | Sbjct 12635 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGATCTATAAAAGCTCCTC 12576 Query 52968 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 53026 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 12575 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 12516 Query 53027 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCACCATCTACCATAATC 53083 | |||| | |||| |||| ||| | |||| | ||||||||| | ||||| Sbjct 12515 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 12457 Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 12456 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 12397 Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 12396 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 12337 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 12336 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 12277 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 53321 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 12276 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 12219 Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 53380 |||| || | || || || ||||| | || || | || Sbjct 12218 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 12159 Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||| ||||||| ||| | ||||| || ||||||| ||||||||| || |||||| Sbjct 12158 TC-CCTTGATATGTACTGTACGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 12100 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 12099 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 12040 Query 53501 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | ||| | | | | | |||||| ||||| | || |||||||||||||| ||||| Sbjct 12039 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 11981 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 |||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| Sbjct 11980 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 11921 Query 53620 TTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676 ||| || | ||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 11920 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 11864 Query 53677 T-TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCT 53735 | ||| || | ||||||||||| | ||| || || || || || || || || || | Sbjct 11863 TCTGTT-ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTT 11805 Query 53736 CATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 ||| | || | | ||||| | | ||||||||||||||| ||||| || || || | Sbjct 11804 CAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGC 11748 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| |||| Sbjct 11747 CAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTAC 11688 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 |||| || | |||| ||||||||| | ||||| | | |||| | | | | || Sbjct 11687 CAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTT 11630 Query 53913 TGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | || || ||| |||| || ||| | ||| | | |||||| || ||||| || | Sbjct 11629 TATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGC 11571 Query 53971 ATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC- 54028 | | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 11570 AGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTT 11514 Query 54029 --ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 54086 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 11513 CTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCA 11454 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| | Sbjct 11453 TTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAG 11394 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 | || || || || | | | || || ||||||||||| || ||||||| ||||| | Sbjct 11393 GCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGG 11334 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 |||| || ||||| |||||||||||||| | | |||||| || | ||||| || || | Sbjct 11333 CGGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAG 11274 Query 54267 AGATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCC 54322 || || || ||| || | || || || || || |||||| || || || Sbjct 11273 CTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCA 11218 Query 54323 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 54382 |||||| |||||||| ||| ||||||| |||||| | || || || || |||||||| Sbjct 11217 GATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCATCT 11158 Query 54383 ATCAT 54387 |||| Sbjct 11157 TTCAT 11153 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| |||| ||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 10640 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 10581 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 10580 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 10530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 9881 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 9822 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||| || ||| ||||||||||| || | ||| | || | || | ||| Sbjct 9821 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 9762 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 9761 GTTACACCAGAATATATGCC 9742 >seq29470 Length=9567 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 147329 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 147386 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 3654 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 3711 Query 147387 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 147446 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 3712 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3771 Query 147447 TCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTA 147506 |||||||| || ||||| | |||| | | | ||||||||| | || | Sbjct 3772 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3831 Query 147507 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 147565 ||||| | || | ||||| || |||| ||||||||| ||| | | | || | Sbjct 3832 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACT-TGA 3890 Query 147566 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAA 147622 | |||||| ||||| | || | || || | ||| || | | | | || || || | Sbjct 3891 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 3950 Query 147623 GTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTG 147682 |||||||| |||||| | ||||| |||| | || | | || || | | | |||| Sbjct 3951 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 4010 Query 147683 ACTGTTTGTA 147692 | || || || Sbjct 4011 ATTGCTTATA 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592533533392320