Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_002185.1 Length=35466 Score E Sequences producing significant alignments: (Bits) Value seq1539 131 4e-26 seq3145 107 4e-19 seq14859 91.5 3e-14 >seq1539 Length=57711 Score = 131 bits (144), Expect = 4e-26 Identities = 230/328 (70%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 5369 GAGAAAAAACATGATTAACAATACAGTTTTAGTTGGAAGATTAACTAAAGACCCAGAGTT 5428 |||| |||| ||||| || ||| | |||||| ||| | ||||| ||||| || || || Sbjct 16182 GAGATAAAA-ATGATCAATAATGTAACTTTAGTAGGACGGTTAACCAAAGATCCCGA-TT 16125 Query 5429 TAA---ATACA-CAGGTAGCAACATCGCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTA 5484 || |||| || || ||| || ||||| || |||| | | | || ||||| || | Sbjct 16124 TACGTTATACCGCAAGTGGCA-CA--GCAGTGGCCACTTTTACCTTAGCCGTTAATCGCA 16068 Query 5485 ACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGACTTTATCAATTGCGTTATCTGGCGCC 5544 | |||| | || || || | || ||||| || ||||||||||| || || ||||| Sbjct 16067 ATTTTACGAATCAAAACGGCAATCGAGAAGCTGATTTTATCAATTGTGTGATTTGGCGTA 16008 Query 5545 AGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTAATTGGAATCACTGGAC 5604 | | ||| |||| |||||| | |||||||| || ||||| || || |||| Sbjct 16007 AACCAGCGGAAACGATGGCTACATTAGCTAAAAAGGGTAGTTTAATCGGCGTCGTCGGAC 15948 Query 5605 GTATTCAGACTCGTAGCTATGAAAACCAACAGGGTCAACGAGTGTATGTGACAGAGGTAG 5664 | ||||| || || | ||||| ||||| || || || || || || ||||| || || | Sbjct 15947 GGATTCAAACGCGGACTTATGACAACCAGCAAGGACAGCGTGTCTACGTGACTGAAGTTG 15888 Query 5665 TCGCTGAGAATTTCCAAATGCTAGAAAG 5692 | || || ||||||||| | ||||||| Sbjct 15887 TGGCCGATAATTTCCAACTATTAGAAAG 15860 >seq3145 Length=45091 Score = 107 bits (118), Expect = 4e-19 Identities = 224/329 (68%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 5364 AAGAGGAGAAAAAACATGATTAACAATACAGTTTTAGTTGGAAGATTAACTAAAGACCCA 5423 ||||||| ||||| |||||||||||| |||||| ||| | ||||| |||||||| Sbjct 1781 AAGAGGA--AAAAATATGATTAACAATGTGACTTTAGTAGGACGTTTAACGAAAGACCCT 1838 Query 5424 GAGTTTAAATACAC-AG-GTAGCAACATCGCAGTAGCATCTTTCAGCCTTGCGGTTAACC 5481 || || || || || | | || | | || || | || | |||||| ||||| | Sbjct 1839 GATTTGCGCTATACGAGCGGTGGAAAA--GGTGTGGCTACATTTACCCTTGCAGTTAATC 1896 Query 5482 GTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGACTTTATCAATTGCGTTATCTGGC 5541 | ||||||| || || ||||||||||||||||| | | || || || ||| Sbjct 1897 GAAACTTTACCAATCAAGCCGGAGAGCGTGAAGCAGACTTCGTTCAATGTGTGATTTGGA 1956 Query 5542 GCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTAATTGGAATCACTG 5601 | | | ||| |||| ||||||||| ||| | || | || | || | || | Sbjct 1957 GGAAACCAGCGGAAACACTGGCTAATTATGCTCGCAGGGGAACCTTGCTAGGCGTGACCG 2016 Query 5602 GACGTATTCAGACTCGTAGCTATGAAAACCAACAGGGTCAACGAGTGTATGTGACAGAGG 5661 |||| ||||| || ||| ||||| || || || || ||||| || ||||| || || | Sbjct 2017 GACGAATTCAAACACGTTCTTATGACAATCAGCAAGGGCAACGTGTTTATGTAACGGAAG 2076 Query 5662 TAGTCGCTGAGAATTTCCAAATGCTAGAA 5690 | || || |||||||| ||| || | ||| Sbjct 2077 TTGTAGCAGAGAATTTTCAATTGTTGGAA 2105 >seq14859 Length=68005 Score = 91.5 bits (100), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 12/187 (6%) Strand=Plus/Plus Query 5375 AAACATGATTAACAATACAGTTTTAGTTGGAAGATTAACTAAAGACCCAGAGTTTA--AA 5432 || ||||||||| || || ||||| ||| | |||||||| |||||||| | | || Sbjct 19974 AAGCATGATTAATAACGTTGTATTAGTGGGACGGTTAACTAAGGACCCAGACATAAGAAA 20033 Query 5433 TACACAGGTAGCAAC----ATCGCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTT 5488 ||| || || ||| ||||| ||| ||| | || ||||| ||||||||||| Sbjct 20034 TACTCAACAAGGAACGACGATCGC--TAG----TTTTACACTAGCGGTCAACCGTAACTT 20087 Query 5489 TAAGGATGCTAATGGTGAGCGTGAAGCAGACTTTATCAATTGCGTTATCTGGCGCCAGCA 5548 ||| || ||||| ||||||||||||| ||||| ||||| ||| ||||| || Sbjct 20088 TAAAGACCAAAATGGAAAGCGTGAAGCAGATTTTATTAATTGTGTTGCTTGGCGTAAGAC 20147 Query 5549 AGCTGAA 5555 ||||||| Sbjct 20148 AGCTGAA 20154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113154084673824