Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20 152 3e-32 seq32113 100 2e-16 seq16183 100 2e-16 seq48995 84.2 1e-11 >seq20 Length=148542 Score = 152 bits (168), Expect = 3e-32 Identities = 272/390 (70%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 30994 GTCGGCGGTTACTGCACGACCAACTCGGTGCCGCGTCTGTGTAACAGCGAAACGTCGATA 31053 || ||||| |||||||| |||||| |||||||| |||||| |||||||| | Sbjct 124035 GTGGGCGGCTACTGCACCACCAACAGCGTGCCGCGCAATTGTAACCGCGAAACGAGCGTG 123976 Query 31054 CTGCTGTACGGCGCTAACCAGT-GGACGTGCATAGCGGAGGACCCCCGTTACTTTGCCGG 31112 |||| | | || | |||| ||||||| | ||||||||||| || || || ||||| Sbjct 123975 GTGCTC-ATGAGTCTGAACAGTTGGACGTGTCTGGCGGAGGACCCGCGCTATTTCGCCGG 123917 Query 31113 CGAGGCCAACATGATTCAGATGGCGGGCAGACAGCACAGCGAGCTGGTGAACGGCGAACA 31172 || | |||||||| ||| ||||||| | || ||| ||| | || || | | Sbjct 123916 CGTCGACAACATGACCCAGGTGGCGGGACGGCAACACTTCGA-CAGGATCGCGCCCGGCC 123858 Query 31173 ACTGCGCAAG-AACGTGCTCTGGGACAATCTGCTGAACGTCGAA--GTGAATCCGACCGC 31229 | ||| | | |||||||| | |||| |||| ||| ||| || | |||| Sbjct 123857 AGAGCGAACGCAACGTGCTGTTCGACAGATTGCTCAAC--CGACCCGTCGACATTGCCGC 123800 Query 31230 GAACACGTTCAGACGCAGCTGGGACGACGTAATGGAGGACGGTAAGCGCCGTTTCGAGGT 31289 ||||||||||||||| ||||||||| | ||| |||| | |||||||||| | | Sbjct 123799 CAACACGTTCAGACGCCACTGGGACGAACTGCTGGCGGACAACACTCGCCGTTTCGTGAT 123740 Query 31290 CAGATGCGACGCGCTCGATTTGAAGCACAACGCCATGTTCGTCAATCCGTACAACGCGAT 31349 |||||||||||||| || |||| ||||||||||||||||| || || | Sbjct 123739 GCATTGCGACGCGCTCGACGACAACTACAATCGCATGTTCGTCAATCCGTTGAATCCGCT 123680 Query 31350 AGAATGTCTGCCGAACGTGTGCACGGACGT 31379 ||||| |||| |||||||||||| |||| Sbjct 123679 CGAATGCATGCCCAACGTGTGCACGAACGT 123650 Score = 123 bits (136), Expect = 2e-23 Identities = 207/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 1120 CCGAGGATCCTTTCCGAGGACCCGGAAAGAACGTGAGGATCACATTGTTCAAGGAGATCC 1179 |||| || || ||| || ||||| || ||| | | | || |||||||| ||||| | Sbjct 136672 CCGAAGACCCCTTCACCGGGCCCGGCAAAAACCAAAAGCTAACTTTGTTCAAAGAGATTC 136731 Query 1180 GCAGGGTGCAACCCGACACTCTTAAGCTTGTCTGCAACTGGAGCGGCAAAGAGTTTCTGA 1239 ||| ||| | || ||||| | ||||| || |||||||||||||||||||||| || Sbjct 136732 GCAATGTGAAGCCGGACACGATGAAGCTGGTGCTCAACTGGAGCGGCAAAGAGTTTTTGC 136791 Query 1240 GGGAAACGTGGACTCGTTTCATTTCGGA-AGAGTTCCCGATCACCACTGACCAGGAAATT 1298 | ||||| ||||| |||||| | ||| || ||||| || || |||||||| | Sbjct 136792 GTGAAACTTGGACCCGTTTCGTCGAGGACAGTTTTCCC-ATTGTCAACGACCAGGAGGTG 136850 Query 1299 ATGGATCTGTGGTTTGAACTTCAGCTGCGACCGATGCAGCCCAACCGCTGCTACAAGTTC 1358 ||||| ||| | | | | ||| |||| | | ||||||||| || |||||||| Sbjct 136851 ATGGACGTGTTTCTCGTGATCAACCTGAGACCCACTCGGCCCAACCGTTGTTACAAGTTT 136910 Query 1359 CTCATGCAGTACGCTCTAGGCGCCGACGCCGATTACGTTCCTCACGACGTCATTCGC 1415 | || |||| || | |||||||| ||||| || ||||| || |||||| Sbjct 136911 TTGGCTCAACACGCGCTCCGTTGGGACGCCGAGTACGTGCCGCACGAAGTGATTCGC 136967 Score = 118 bits (130), Expect = 7e-22 Identities = 175/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 93309 ACCACGTAATCCTTAGCGTACACGTCTCGCACGTACAGAATGTCCTCGCCCCTGTCGTAC 93368 ||||||||||| | ||||||||||| ||| | ||| | || || | |||||||| Sbjct 96916 ACCACGTAATCGCTGGCGTACACGTCGCGCGCAAACAACACATCGTCCTGCTTGTCGTAC 96857 Query 93369 ACTAGCTGTATGGCTCTGTTTATAATTTTATCGTCGTCGTAATTACCGTAGAGAAACATG 93428 || || || ||||| | || || || || | |||| || ||||| | |||||| Sbjct 96856 ACCAGTTGGATGGCACGATTGATGTGCTTCTCCTGGTCGACGTTGCCGTACAAAAACATA 96797 Query 93429 CGCCTGAGATTTTTGTTGCGGGCATACTGTTTATCaaaaaaaTTGTGCAATAAAATGTTG 93488 ||| || || ||| |||| ||| |||| || ||||||||||| ||||||||| Sbjct 96796 CGCTTGCAATGTTT--TGCGT--ATA--GTTTGTCGTAAAAATTGTGCGCCAAAATGTTG 96743 Query 93489 TTGTTCATGAGAATGTTTGGAAA--CGAAAAATGCCTACCGTCTATAATGAATGTTCCCG 93546 ||||||||||||||||| ||||| || ||| || |||||| | ||||| || ||| Sbjct 96742 TTGTTCATGAGAATGTTGGGAAAGCTGAGAAA--CCGACCGTCCAACATGAACGTGCCCC 96685 Query 93547 TGA 93549 ||| Sbjct 96684 TGA 96682 Score = 96.9 bits (106), Expect = 2e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42897 TGTGGGAGAGATCGTACGAGGACAATTACACTTACGGTCAGCAGTTGAGCATCCGTATGA 42956 |||||||| || ||||||||||||||||| ||| || ||||||||||| || || | Sbjct 101857 TGTGGGAGCGAGGCTACGAGGACAATTACACGCTCGGCCAACAGTTGAGCATTCGCATCA 101916 Query 42957 CTACAAATTTGATACAGAGCGGCCTGGACTTTAAACATCAA 42997 | || || ||||||||||||| |||| |||||||||||| Sbjct 101917 CCACCAAACTGATACAGAGCGGGTTGGATTTTAAACATCAA 101957 Score = 95.1 bits (104), Expect = 8e-15 Identities = 295/454 (65%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 81996 CAGAATAAGAACGGTTACGCCGGTCAGTATCTGTATTCTACATTTTTGAATACGAGCAGT 82055 |||| || ||||||||||||| ||| ||| ||||||| || ||| | || || | Sbjct 86940 CAGAGCAAAAACGGTTACGCCGTTCAATATTTGTATTCGACGTTTCTCAACACCGCCTCC 86881 Query 82056 TTTTACGCAAACGTTCAGTGTTTTAACGGTCTAAACGAGATAATTCCTCC-CAAGCCGGC 82114 || || || ||||| |||||||| ||||| | ||||| || |||| || | ||| || Sbjct 86880 TTCTATGCCAACGTGCAGTGTTTGAACGGCGTCAACGAAATCGTTCCGCCGCGCGCCAGC 86821 Query 82115 GCTCCAGCGTTACTACGGGCGAAAACTGGAAAACATTAAAGCGTGGAACACGCGTCATCC 82174 | || | || |||||||| || ||| ||| | || |||| |||||| || || Sbjct 86820 G-TCAACCGCTACTACGGCCGGCGGGTGGGCAACGTGCGCGCCTGGACCACGCGACACCC 86762 Query 82175 AAACATTAGTCAGCTATCGACTCAGTATTCTCGCGTCAGAAGCAACGATGAGGAATGTAA 82234 ||||| || ||||| || ||| || ||| | |||||| | | Sbjct 86761 CAACATCAGCCAGCTGAGCACGCAGGTGTCGGACGTGCGCCTCAACGACTCCAACACCGA 86702 Query 82235 TTGGAATGTAAAAATAGGTCTAGGCACGTTTGTGGGCGCGAATAGAGATTGTGACGGAGA 82294 |||||| || ||| | || | |||| ||| |||||| || | ||||| || || || Sbjct 86701 TTGGAACGTCAAAGTGGGCTTGGGCATATTTCCGGGCGCCAACACCGATTGCGATGGCGA 86642 Query 82295 CAAAGAAGTGATTACTTTTCCACCCTATCCCAATTCGTTGATTGATTTCGAATCTCTGAT 82354 |||| || | || || |||| || | ||||| | || || | || | | | | Sbjct 86641 CAAAAAAATCATCACCTTTCTGCCGCAACCCAACAGTCTCATCGACCTGGAGTGTTTATT 86582 Query 82355 GTATTGTGATCCAAAGTACAGTTTTCTGTGTTTCGATAAAAACAAATTGGTCTTTGTGAG 82414 ||| | || || || | ||| | || ||||| || || | | ||| ||| Sbjct 86581 GTACGGCGACCCGCGGTTTAATTTCATATGCTTCGACAAGAATCGACTCAGCTTCGTGTC 86522 Query 82415 TCAGCAAATTTACTACTTGTATAAAAACATTAAC 82448 || ||||||||||| ||| ||||||||| || Sbjct 86521 CCAACAAATTTACTATCTGTTCAAAAACATTGAC 86488 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| | || ||||| ||| | || |||||| |||||||||||||||| Sbjct 105938 CCGCCTCGCAATCGCAACACCATGTGCACGGTGGCTTCTTTTTGTATGTTGTAGTCGGCG 105997 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | |||||| || | ||| ||||| || | ||||| ||||| || ||||||||| Sbjct 105998 ATCGTTTTGTCGTCTTCGAGCTGTTTGCCCGCATAGATGAGTCGCTGTTGATCGACGGGC 106057 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 || | || |||||||| || ||||| || | | | | | || | || | Sbjct 106058 ACACCTTCTTTGTCGGCAATTTTTTGTTTGACTTGAGACAAAGTTTCCGCGGAGCTGGTT 106117 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 106118 TCGATTGTGATCGTTTTGCCCGTTAATGTTTTGACAAATATTTGCAT 106164 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 43351 CAATTCCCTAAAATTTTACTATTATTGCCTGAAAAACAAATTCGTATTTTCCATAGGCGA 43410 |||||| || ||||| ||||||||||| ||||||| ||||| || ||| | ||||| Sbjct 102446 CAATTCGCTCAAATTCTACTATTATTGTTTGAAAAATAAATTTGTGTTTGAAAGTGGCGA 102505 Query 43411 CTACGAAACCCTTTATTTGCTGTACACTATAGTGGTGCTGGAGTACCTCAACGGAGGTTA 43470 | |||||| | | |||| ||||||| || ||| ||||||| |||| ||| | Sbjct 102506 CAACGAAATGTTGTTTTTGTTGTACACGATCGTGTGTCTGGAGTGGTGCAACAAAGGCCA 102565 Query 43471 TCTGAACTCGTTTACGCTAGAAAA 43494 || || |||||||| | ||||| Sbjct 102566 CCTCAATTCGTTTACATTGGAAAA 102589 >seq32113 Length=13445 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 || |||||| |||||| || ||||| ||||| ||||| ||| | || |||||||| Sbjct 5992 TGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCCAACTGT 6051 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || ||||| || || ||||| ||||| ||| | || ||||||||| ||||| Sbjct 6052 TTACCAGCGAAGATTAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTA 6111 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | || | || | |||| | || || || | |||||||| || || || Sbjct 6112 GCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCTAAAGTGATGGTCTTCCCAGTA 6171 Query 34367 AGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || ||||||||||| Sbjct 6172 AGAGTCTTAACGAAGATCTGCAT 6194 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| |||||| || || || ||||| || Sbjct 7563 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 7622 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| ||||| ||||| || |||||||| | || || || || || Sbjct 7623 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 7682 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||| ||||| | || | || | ||||| | ||| | Sbjct 7683 AATGCCTTCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 7741 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || |||||||| || || || |||||||||||||||||||| Sbjct 7742 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7790 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| ||||| |||||||| || |||||||| || || |||| | || ||| Sbjct 6214 ACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGGCCATCCTCC 6273 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||||||||| ||||||||||| || || || || ||| | | ||| ||||| Sbjct 6274 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGG 6333 Query 34301 ATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||| || ||||| | || | || | || | | ||| || || | || || ||||| Sbjct 6334 ATC-TTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTAATAGTTTT 6392 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || |||||||||||||| Sbjct 6393 CCCTGTCAGTGTCTTTACAAAGATCTGCAT 6422 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || |||| || || | |||| ||| ||| || || || || || || || Sbjct 7336 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 7395 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || |||| || || || || ||||| |||| ||| || || ||| Sbjct 7396 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGA 7455 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| |||||| ||| | || | || | |||| || ||| || Sbjct 7456 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGTTCTACC 7515 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || ||||| || |||||||||||||| Sbjct 7516 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 7562 >seq16183 Length=3749 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||| | ||| |||||| ||| ||||| || || ||||| || Sbjct 852 TCCACCCCGTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGA 911 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| || | || |||| ||||| || |||||||| || | || || || || Sbjct 912 CAGCGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 971 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||||| ||||| | | || | ||| | | ||| || Sbjct 972 AATGCCTTCCTTGTCTTGTATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCAC 1031 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || | |||||| || ||||| ||||| Sbjct 1032 TTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 1079 >seq48995 Length=1108 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 ||||||||| ||| ||||| ||||||||||| |||| || | || || | || Sbjct 422 TGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGACAATGTGCGCCCATCTTCAAGTTGT 363 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || ||||||||||||| ||| ||||| ||| | | |||||| || || ||| Sbjct 362 TTTCCAGCGAAAATGAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAAT-TTT 304 Query 34307 TGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 |||||| | || | || | || | | || || || | || || ||||| || || Sbjct 303 TGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGT 244 Query 34366 GAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| ||||| || |||||| Sbjct 243 AAGAGTTTTTACAAAAATTTGCATC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322441678855040