Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_002666.1 Length=35538 Score E Sequences producing significant alignments: (Bits) Value seq7607 437 2e-118 seq14859 172 1e-38 seq1539 136 9e-28 seq1464 113 1e-20 seq640 86.0 1e-12 >seq7607 Length=81728 Score = 437 bits (484), Expect = 2e-118 Identities = 667/947 (70%), Gaps = 11/947 (1%) Strand=Plus/Minus Query 29280 GGCGGTGGTTGGAATGGTCAATACCCACCAGAAGTCATAAGTGACCGTGATAAACGCTAC 29339 |||||| ||||||||||||| |||||||||||| | | || |||||||||||||| Sbjct 53237 GGCGGTAGTTGGAATGGTCAGTACCCACCAGAAATTACTTCGGATCGTGATAAACGCTAT 53178 Query 29340 TGGCAAATCTGGGCAATGGCAATTGGGGCTGGTTTCTCTAAACAAGCGGCGGCCGCATTA 29399 |||||||| ||||||||||||||||| || || ||| | ||||||| || ||||| | Sbjct 53177 TGGCAAATTTGGGCAATGGCAATTGGCGCAGGATTCACACAACAAGCCGCTGCCGCTCTT 53118 Query 29400 CTCGGAAATGCACAGGGTGAATCTGATGCCAATCCAACGGCTGATGAGGGCGGCGGACGT 29459 | ||||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 53117 TTAGGAAACGCTCAAGGAGAATCTGATGCAAATCCTACTGCCGATGAAGGAAATGGTAAA 53058 Query 29460 CCTGGATTCGGTTATGGGGTTTGGCAATGGACGGATAGTTCAGGCGCTAGCTCTGGACGT 29519 || |||||||||||||| || ||||| ||||| |||||| |||| || || ||| ||| Sbjct 53057 CCAGGATTCGGTTATGGCGTATGGCAGTGGACAGATAGTACAGGGGCGAGTAGTGGTCGT 52998 Query 29520 GTTTATATGATTAACCTCATGACACGAGCAGGAGTGACTGACAATCCTGACACAATCACA 29579 || |||||||| || | ||||| | ||| ||| | ||||| |||||||| || |||||| Sbjct 52997 GTATATATGATCAATTTAATGACTCAAGCCGGAATCACTGAAAATCCTGATACTATCACA 52938 Query 29580 GCCCAATTCAAACTCTTGATGTGGCATGCACAAAACGGCCAATGGATTGCGAAAAGTTCT 29639 || || || || | || ||||||||||| | ||||| ||||||||||| | | | Sbjct 52937 GCGCAGTTTCAATTGTTAATGTGGCATGCTCCGAACGGTCAATGGATTGCAACCAACGCC 52878 Query 29640 TATCCTTATTCTTGGACTCAATTCATGACATTGACCAATATCAATACTGCAACGCAAGCT 29699 || |||||| | ||||| ||||| ||| | || ||||| ||| ||||| ||| Sbjct 52877 TACCCTTATACATGGACACAATTTATGGGCCTCACAGATATCGCTACCGCAACAAGAGCG 52818 Query 29700 TTTGTAGCTAACTTTGAACGTCCTTTAAACGGACACCCTGAACGTAGCACTTGGGCACAA 29759 || | | ||||||||||| || ||||| | ||||||||| | | ||| || Sbjct 52817 TTCGAAAAGAACTTTGAACGACCGTTAAATGATCACCCTGAAAGAGTCGGCTGGTCAACT 52758 Query 29760 GAGTGGTATAACAAATTT----GTTAATCTTAAAATCCCAAGCGGTGGCGGAGGTTATAT 29815 | ||||| ||| ||| || |||| ||||| || | | || ||||| Sbjct 52757 AATTGGTACAACCGGTTTAAAGATTTATCT----ATCCC--GCAAT-CAGCTGGATATAT 52705 Query 29816 TGCTCCAATTTCAAGTCCTATTACCGTAACAAGTGAAATGGGTTGGAGAACGAGTCCAAT 29875 | | |||||| || || || || |||||| | |||||| | || || || || Sbjct 52704 TACGCCAATTAGCGCACCAGTTCGAGTGACTAGTGAATTTGGTTGGCGTACAAGCCCTAT 52645 Query 29876 CACCGGAGCGCAAGAATTTCACAATGCTATGGACTTGGTTAATGGCAATCCAACAACTCC 29935 |||||| || |||||||| || |||| || || |||| ||| |||||||| || || Sbjct 52644 CACCGGTGCTCAAGAATTCCATAATGGAATTGATCTGGTGAATAACAATCCAAATACGCC 52585 Query 29936 AATCTTAGCTTCTGGCGATGGTCAAGTGGTCCAAGCGGGAAGTAATTATTATGACTGGTA 29995 ||||| ||||| | || || | | | || ||| | |||| | ||||| Sbjct 52584 TATCTTTGCTTCAAGTGAGGGAGAGATCATTGTTGCAGGAGCAGAATATTTTAGTTGGTA 52525 Query 29996 TGGAAATTACACGGTCATCAAGCATGCGGATGGACTTTATACAGGGTACGCACATCAAAG 30055 || ||||| ||||||| ||| | ||||| |||| || || ||||| ||| ||| Sbjct 52524 CGGTAATTATGTAGTCATCAGGCACTCAGATGGTATTTACACGGGTTACGCTCATTTAAG 52465 Query 30056 CAGAATCGATGTTTCTGTGGGTCAAAATGTTAAAAAGGGCCAACAAATTGGACTTATGGG 30115 || | |||||||||||||| ||||| ||| | | || |||||| | || | ||||| Sbjct 52464 TAGGGTAGATGTTTCTGTGGGACAAAAGGTTTCACAAGGACAACAATTAGGGTTGATGGG 52405 Query 30116 AGCGACTGGTCCGGTCACTGGACCACATTTGCACTTCCAATTTATGGACCAATATTGGCC 30175 | | ||||||||| || ||| |||| | || || ||||||||||| ||| || || Sbjct 52404 AACAACTGGTCCGTCTACAGGAGAACATCTTCATTTTCAATTTATGGATGAATTTTATCC 52345 Query 30176 ATCATCAAGTGCTCACTTTAAAAATCCAAGAGATTATATCAAATTTT 30222 ||||||| |||| || | ||||| | ||||||| | |||| Sbjct 52344 CTCATCAAACGCTCGATTCCATAATCCGCGTAATTATATTGATTTTT 52298 >seq14859 Length=68005 Score = 172 bits (190), Expect = 1e-38 Identities = 265/374 (71%), Gaps = 3/374 (1%) Strand=Plus/Plus Query 29852 AATG-GGTTGGAGAACGAGTCCAATCACCGGAGCGCAAGAATTTCACAATGCTATGGACT 29910 |||| || ||||| | |||||||| | | |||||||| || |||| || || | Sbjct 44258 AATGTGGATGGAGGAAAAGTCCAATTAATAATGAACAAGAATTCCATAATGGAATTGATT 44317 Query 29911 TGGTTAATGGCAATCCAACAACTCCAATCTTAGCTTCTGGCGATGGTCAAGTGGTCCAAG 29970 | | ||||| ||||| | || || || || || || |||||| |||| || || | Sbjct 44318 TTATAAATGGAAATCCTAATACACCTATTTTTGCAGCTTTAGATGGTGAAGTTGTTCAGG 44377 Query 29971 CGGGAAGTAATTATTATGACTGGTATGGAAATTACACGGTCATCAAGCATGCGGATGGAC 30030 |||| ||||||||||||||||||||| |||||| ||| || || ||| ||||| Sbjct 44378 CGGGTGCTAATTATTATGACTGGTATGGTAATTACGTGGTTATTAAACATAATAATGGAA 44437 Query 30031 TTTATACAGGGTACGCACATCAAAGCAGAATCGATGTTTCTGTGGGTCAAAATGTTAAAA 30090 | ||||| || || ||| | | || ||||||||||| || ||||| || | | Sbjct 44438 AGTGGACAGGTTATGCTCATTTATCTCGTATTGATGTTTCTGTTGGACAAAAAGTCCAGA 44497 Query 30091 AGGGCCAACAAATTGGACTTATGGGAGCGACTGGTCCGGTCACTGGACCACATTTGCACT 30150 | ||| |||||||| | |||||| | |||||||| |||||| |||| | || | Sbjct 44498 AAGGCGCTCAAATTGGCTTGATGGGAACAACTGGTCCATCTACTGGAGAACATCTACATT 44557 Query 30151 TCCAATTTATGGACCAATATTGGCCATCATCAAG-TGCTCACTTTAAAAATCCAAGAGAT 30209 | ||| ||||| | | |||||||| ||| | || || | | ||| | ||||||||| || Sbjct 44558 TTCAAATTATGAAAAATTATTGGCC-TCAGCCAGTTGTTGATTTTGAGAATCCAAGAAAT 44616 Query 30210 TATATCAAATTTTA 30223 |||||| ||||||| Sbjct 44617 TATATCCAATTTTA 44630 >seq1539 Length=57711 Score = 136 bits (150), Expect = 9e-28 Identities = 225/322 (70%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 6617 AATAATGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACA 6676 || |||||| |||||||| |||||||| || ||||| || || || | | | Sbjct 16177 AAAAATGATCAATAATGTAACTTTAGTAGGACGGTTAACCAAAGATCCCGATTTACGTTA 16118 Query 6677 TACACCACAGAACCA-AGCAGTAGGTACATTTGGATTAGCTGTAAATCGCCAGTTTAAAA 6735 ||| || || || |||||| | || ||| ||||| || |||||| | |||| | Sbjct 16117 TACCGCA-AGTGGCACAGCAGTGGCCACTTTTACCTTAGCCGTTAATCGCAATTTTACGA 16059 Query 6736 ATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTTGGCGACAACAAGCCG 6795 || || ||| | || || |||||||| || || || || |||||||| ||| ||| | Sbjct 16058 ATCAAAACGGCAATCGAGAAGCTGATTTTATCAATTGTGTGATTTGGCGTAAACCAGCGG 15999 Query 6796 AAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAA 6855 ||| | |||| || |||||||| || ||| || || | ||||||||||||| Sbjct 15998 AAACGATGGCTACATTAGCTAAAAAGGGTAGTTTAATCGGCGTCGTCGGACGGATTCAAA 15939 Query 6856 CAAGGAACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATA 6915 | ||| ||||| ||||| |||||||| || || || || |||||||| || |||| Sbjct 15938 CGCGGACTTATGACAACCAGCAAGGACAGCGTGTCTACGTGACTGAAGTTGTGGCCGATA 15879 Query 6916 CTTTCCAAATGCTAGAAAGCAA 6937 ||||||| | ||||||| || Sbjct 15878 ATTTCCAACTATTAGAAAGTAA 15857 >seq1464 Length=66918 Score = 113 bits (124), Expect = 1e-20 Identities = 215/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 6622 TGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACAC 6681 |||||||||| |||||| |||| || || | || || || || | || ||||| Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914 Query 6682 CACAGAACCAA-GCAGTAGGTACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAATGCG 6740 || || || || |||| || || |||||||| ||||| | || | | Sbjct 17915 CA-AGTGGCACTGCTGTAGCAACGTTCACTTTAGCTGTCAATCGTAACTTCACGAGCCAA 17973 Query 6741 AATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTTGGCGACAACAAGCCGAAAAT 6800 || ||| | |||||||| ||||| ||||| || || ||||||||| || ||| |||| Sbjct 17974 AACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACA 18033 Query 6801 TTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAACAAGG 6860 |||| || | ||| | |||||| || | | || ||||||| || |||||||| | Sbjct 18034 CTAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGT 18093 Query 6861 AACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTTC 6920 ||||| || |||||||||||| || || || || ||||| ||||| || | ||| Sbjct 18094 TCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTC 18153 Query 6921 CAAATGCTAGAAAG 6934 ||| | | ||||| Sbjct 18154 CAATTATTGGAAAG 18167 >seq640 Length=68089 Score = 86.0 bits (94), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 10734 AGAATATACTTGTGAAACGTGTGGATTTTGCCACATTGACGGTTGGGAAGCTGGGGCATG 10793 |||| | |||||||| |||||| |||||||||||||| |||||||| ||| || Sbjct 26287 AGAAGACCCTTGTGAAGACTGTGGAGCATGCCACATTGACGGCTGGGAAGCCATGGCGTG 26228 Query 10794 TTGGAGTTTAGCCAATGACCCTGATTATGACCCATTTGATATTT-AAAGGAG 10844 |||||| || ||| ||||||||||| ||||| | || |||| ||||||| Sbjct 26227 TTGGAGCTTTCTCAACGACCCTGATTACGACCCGTGGGAAATTTAAAAGGAG 26176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113384046684000