Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq5392 168 6e-38 seq2737 165 8e-37 seq14493 150 2e-32 seq19862 120 3e-23 seq1616 105 6e-19 seq14859 91.5 1e-14 >seq5392 Length=101478 Score = 168 bits (186), Expect = 6e-38 Identities = 155/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14526 AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAA 14585 || || ||||||||||||||||||||||| ||||| ||||| ||||||||| ||||| Sbjct 58875 AACGGTACAGTAAAATGGTTTAACGCAGACAAAGGTTTTGGATTTATCACTGGTGAAGAT 58934 Query 14586 GGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGAT 14645 || || || | |||||||| || ||||| |||||| ||| || |||||| || | || Sbjct 58935 GGAAATGACGTATTCGCTCATTTTTCAGCTATCCAAGGTGACGGTTTCAAAACATTAGAC 58994 Query 14646 GAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAAT 14705 ||||||||| || |||||||||||||| || |||||||| | ||||||| |||| Sbjct 58995 GAAGGTCAAGCTGTGACTTTTGATGTTGAAGATGGACAACGTGGCCCTCAAGCAATCAAC 59054 Query 14706 ATCACAAAAGCATAAT 14721 ||| |||||||||| Sbjct 59055 ATCGTTAAAGCATAAT 59070 >seq2737 Length=95958 Score = 165 bits (182), Expect = 8e-37 Identities = 147/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 14516 TATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCAC 14575 |||||||| || || ||||| |||||||||||| |||| ||||| || || || || || Sbjct 42224 TATTATGGAAACAGGTACAGTGAAATGGTTTAACTCAGAAAAAGGTTTCGGTTTCATTAC 42283 Query 14576 TTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAA 14635 ||||| | ||||| ||| | |||| ||| |||||||| |||||| |||||||||||| Sbjct 42284 AGCAGAAAACGGCAACGATGTATTCGTTCATTTCTCAGCTATCCAAGGTGATGGATTCAA 42343 Query 14636 ATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCA 14695 | | | || ||||| |||| ||| | || ||||||||||||||||||||||| | ||| Sbjct 42344 AACTTTAGAAGAAGGCCAAACAGTAAACTTCGATGTTGAAGAAGGTCAACGTGGCCCTCA 42403 Query 14696 AGCA 14699 |||| Sbjct 42404 AGCA 42407 >seq14493 Length=87834 Score = 150 bits (166), Expect = 2e-32 Identities = 153/198 (77%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 14513 AAATAT-TATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTA 14571 |||||| |||| || || |||||||||||||||||| |||| ||||| ||||| |||| Sbjct 86185 AAATATATATGAATAACGGTACAGTAAAATGGTTTAACTCAGACAAAGGTTTTGGATTTA 86244 Query 14572 TCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGAT 14631 ||||| ||||| || ||||| | || || || || ||||| |||||| ||| || | Sbjct 86245 TCACTGGTGAAGATGGACAAGATGTATTTGCACATTTTTCAGCCATCCAAGGTGAAGGCT 86304 Query 14632 TCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTC 14691 | || | | |||||||||||| |||| |||||| | ||||| ||||||||||| | Sbjct 86305 TTAAGACTTTAGATGAAGGTCAAGCAGTTACTTTTGATATCGAAGATGGTCAACGTGGAC 86364 Query 14692 TTCAAGCAGTCAATATCA 14709 |||||||| ||||||| Sbjct 86365 CACAAGCAGTAAATATCA 86382 >seq19862 Length=33806 Score = 120 bits (132), Expect = 3e-23 Identities = 125/163 (77%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 14516 TATTA-TGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCA 14574 ||||| ||| ||| |||||||| |||||||| ||||| || ||||||||||| |||||| Sbjct 20521 TATTAATGGAAAACGGAACAGTTAAATGGTTCAACGCTGAAAAAGGATTTGGTTTTATCT 20580 Query 14575 CTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCA 14634 | ||||| || | || | |||| || || |||||||||||| ||| ||||||| Sbjct 20581 CACGTGAAGATGGAAGCGACGTATTCGTACATTTTTCAGCAATCCAAGGTGACGGATTCA 20640 Query 14635 AATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGA 14677 || || | || ||||||||| |||| ||||| || ||||| Sbjct 20641 AAACATTAGAAGAAGGTCAAGCAGTTACTTTTGACGTAGAAGA 20683 >seq1616 Length=186323 Score = 105 bits (116), Expect = 6e-19 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 14518 TTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTT 14577 |||||| | | |||||||| |||||||| ||| || ||||||||||| ||||| || Sbjct 51041 TTATGGAACACGGAACAGTGAAATGGTTCAACAATGAAAAAGGATTTGGGTTTATTACAG 50982 Query 14578 CAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAT 14637 ||| | || | ||| | |||| || ||||||||||||||| ||||| |||||| Sbjct 50981 TAGACGGTGGAGACGATGTATTCGTACATTTCTCAGCAATCCAAGGCGATGGCTTCAAAA 50922 Query 14638 CACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAG 14697 | || ||||| ||| |||| ||||| | | | |||||| ||||||| ||||| Sbjct 50921 GCTTAGAAGAAGGCCAAGAAGTAGAATTCTCTATCGTTGAAGGTGCGCGTGGTCCTCAAG 50862 Query 14698 C 14698 | Sbjct 50861 C 50861 >seq14859 Length=68005 Score = 91.5 bits (100), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 3074 TCCAAGTAAATAATCCACACTTACATTAAAATATTTTGCAACTGCTTGTATTTTATCGTA 3133 ||| ||||| ||||| ||| ||||| |||||| || |||||| ||| | ||| || Sbjct 12986 TCCCAGTAAGTAATCAACAGATACATCAAAATAGTTCGCAACTAATTGCACTTTGTCAAC 13045 Query 3134 GTTTGGTTTGTTTTTATTCCAACGTCTTATAGTTCCGTTACCATAACCTAAATG-TTCTT 3192 || || ||||| |||| || | ||| || ||||| | || || || ||||| Sbjct 13046 ACCAGGATTATTTTTTCTCCAGCGGTTGATAACCCCATTACCGAATCC-AAGTGCTTCTT 13104 Query 3193 CTATTTTTCGAATAGAGGTATGTTTTTGGGCTGCGAGTTCTTTTATTTTTTCGTATAAAT 3252 ||| || || ||||| | | |||| ||| || |||||||||||||||||||| Sbjct 13105 CTAATTGTCTTATAGATATTTTCTTTTCATTTGCAAGCATTTTTATTTTTTCGTATAAAT 13164 Query 3253 CCATTAATATCAACCTTTC 3271 ||| | |||||||||||| Sbjct 13165 CCACTTGTATCAACCTTTC 13183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48364712298664