Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_003050.2 Length=40248 Score E Sequences producing significant alignments: (Bits) Value seq1464 138 3e-28 seq3145 116 1e-21 seq1539 111 4e-20 >seq1464 Length=66918 Score = 138 bits (152), Expect = 3e-28 Identities = 234/337 (69%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 6895 AGAGGAGGTG--CAAAATGATAAATAACGTTGTTTTAGTAGGGCGACTTACAAGAGATGC 6952 ||||||| || || |||| ||||||||||| |||| || || || |||| |||| | Sbjct 17838 AGAGGAGATGACCATTTTGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCC 17897 Query 6953 CGAACTGAGATACACGCAATCTAAT---ATTGCGGTTGCTACGTTTACTCTTGCTGTAAA 7009 || | |||| || ||| | | | ||| || || ||||| ||| | ||||| || Sbjct 17898 AGATTTACGATATAC---ATCAAGTGGCACTGCTGTAGCAACGTTCACTTTAGCTGTCAA 17954 Query 7010 CCGTCCATTTAAGAACGAGGCTGGAGAGCGTGAGGCTGATTTTATCAATTGCGTTATCTG 7069 ||| || | || | | || | |||||||| |||||||| ||||| || || || Sbjct 17955 TCGTAACTTCACGAGCCAAAACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTG 18014 Query 7070 GAGACAGTTAGCTGAAAATCTTGCTAATTGGGCTAAAAAAGGCTCTCTTATCGGAGTTAC 7129 | || | | ||| |||| || || || | || | ||||| ||||| | || || || Sbjct 18015 GCGAAAATCAGCAGAAACACTAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAAC 18074 Query 7130 AGGAGTAATTCAAACACGTAGCTATGATAACCAGCAAGGTCAACGTGTTTATGTCACAGA 7189 || |||||||| ||| |||||||| || ||||| |||||||| || || ||||| Sbjct 18075 TGGTCGTATTCAAACGCGTTCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGA 18134 Query 7190 AGTTGTTGCCAGTAATTTTCAACTGTTGGAAAGCCGT 7226 ||| ||||| || || ||| | |||||||| ||| Sbjct 18135 AGTAGTTGCTGAAAACTTCCAATTATTGGAAAGTCGT 18171 >seq3145 Length=45091 Score = 116 bits (128), Expect = 1e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 6984 GTTGCTACGTTTACTCTTGCTGTAAACCGTCCATTTAAGAACGAGGCTGGAGAGCGTGAG 7043 || ||||| ||||| ||||| || || || |||| || | || ||||||||||| Sbjct 1869 GTGGCTACATTTACCCTTGCAGTTAATCGAAACTTTACCAATCAAGCCGGAGAGCGTGAA 1928 Query 7044 GCTGATTTTATCAATTGCGTTATCTGGAGACAGTTAGCTGAAAATCTTGCTAATTGGGCT 7103 || || || | | || || || ||||| | ||| |||| || ||||||| ||| Sbjct 1929 GCAGACTTCGTTCAATGTGTGATTTGGAGGAAACCAGCGGAAACACTGGCTAATTATGCT 1988 Query 7104 AAAAAAGGCTCTCTTATCGGAGTTACAGGAGTAATTCAAACACGTAGCTATGATAACCAG 7163 | || | | | || || || ||| ||||||||||||| ||||| || ||| Sbjct 1989 CGCAGGGGAACCTTGCTAGGCGTGACCGGACGAATTCAAACACGTTCTTATGACAATCAG 2048 Query 7164 CAAGGTCAACGTGTTTATGTCACAGAAGTTGTTGCCAGTAATTTTCAACTGTTGGAA 7220 ||||| |||||||||||||| || |||||||| || ||||||||| |||||||| Sbjct 2049 CAAGGGCAACGTGTTTATGTAACGGAAGTTGTAGCAGAGAATTTTCAATTGTTGGAA 2105 >seq1539 Length=57711 Score = 111 bits (122), Expect = 4e-20 Identities = 217/318 (68%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 6906 AAAATGATAAATAACGTTGTTTTAGTAGGGCGACTTACAAGAGATGCCGAACTGAGATAC 6965 |||||||| ||||| || ||||||||| || | || | |||| |||| | | || Sbjct 16176 AAAATGATCAATAATGTAACTTTAGTAGGACGGTTAACCAAAGATCCCGATTTACGTTAT 16117 Query 6966 AC-GCAATCTAATATTGCGGTTGCTACGTTTACTCTTGCTGTAAACCGTCCATTTAAGAA 7024 || |||| | | || || || || ||||| | || || || || |||| ||| Sbjct 16116 ACCGCAAG-TGGCACAGCAGTGGCCACTTTTACCTTAGCCGTTAATCGCAATTTTACGAA 16058 Query 7025 CGAGGCTGGAGAGCGTGAGGCTGATTTTATCAATTGCGTTATCTGGAGACAGTTAGCTGA 7084 | || | || || ||||||||||||||||| || || ||| | | ||| || Sbjct 16057 TCAAAACGGCAATCGAGAAGCTGATTTTATCAATTGTGTGATTTGGCGTAAACCAGCGGA 15998 Query 7085 AAATCTTGCTAATTGGGCTAAAAAAGGCTCTCTTATCGGAGTTACAGGAGTAATTCAAAC 7144 || | |||| | |||||||| || | | ||||| || ||| |||||||| Sbjct 15997 AACGATGGCTACATTAGCTAAAAAGGGTAGTTTAATCGGCGTCGTCGGACGGATTCAAAC 15938 Query 7145 ACGTAGCTATGATAACCAGCAAGGTCAACGTGTTTATGTCACAGAAGTTGTTGCCAGTAA 7204 || | ||||| ||||||||||| || ||||| || || || |||||||| ||| ||| Sbjct 15937 GCGGACTTATGACAACCAGCAAGGACAGCGTGTCTACGTGACTGAAGTTGTGGCCGATAA 15878 Query 7205 TTTTCAACTGTTGGAAAG 7222 ||| ||||| || ||||| Sbjct 15877 TTTCCAACTATTAGAAAG 15860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128427394849680