Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq1464 192 2e-44 seq1539 150 5e-32 seq2203 123 7e-24 >seq1464 Length=66918 Score = 192 bits (212), Expect = 2e-44 Identities = 235/318 (74%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 9664 TGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAG 9723 |||||||||| || ||||||||||| || |||| || || |||| | || |||||| Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914 Query 9724 CGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAG-CAA 9782 | ||| |||||||| |||||||| | || || || || | | || | ||| ||| Sbjct 17915 CAAGTGGCACTGCTGTAGCAACGTTCACTTTAGCTGTCAATCGTA-ACTTCACGAGCCAA 17973 Query 9783 AACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCTGGCGACAGTCTGCTGAAAAT 9842 ||||| | | || || ||||| ||||| ||||| || |||||| | || || |||| Sbjct 17974 AACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACA 18033 Query 9843 TTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT 9902 |||| |||| || | ||||| || | | || || || ||||||||||| || ||| Sbjct 18034 CTAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGT 18093 Query 9903 AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTC 9962 || || || ||||||||||||||||| || ||||||||||| ||||| || || ||| Sbjct 18094 TCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTC 18153 Query 9963 CAAATGTTGGAAAGTCGT 9980 ||| | |||||||||||| Sbjct 18154 CAATTATTGGAAAGTCGT 18171 >seq1539 Length=57711 Score = 150 bits (166), Expect = 5e-32 Identities = 240/342 (70%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 9637 ATTAAAAAAGAAA-GCAGAGCaaaaaaaTGATTAATAATGTAGTACTAGTTGGTCGCATG 9695 || || | ||||| | |||| | ||||||||| ||||||||| |||| || || | Sbjct 16199 ATGAACAGAGAAATGGAGAG-ATAAAAATGATCAATAATGTAACTTTAGTAGGACGGTTA 16141 Query 9696 ACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGCTACGTTCACACTT 9755 ||||| || | || | || ||||| || ||| ||| || || || || || | Sbjct 16140 ACCAAAGATCCCGATTTACGTTATACCGCAAGTGGCACAGCAGTGGCCACTTTTACCTTA 16081 Query 9756 GCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGT 9815 || || || |||| |||| | |||||||| | ||||||| ||||| || || ||| Sbjct 16080 GCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGAGAAGCTGATTTTATCAATTGT 16021 Query 9816 GTTATCTGGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATC 9875 || || ||||| | | || |||| | || | | |||||||| ||| ||| ||| Sbjct 16020 GTGATTTGGCGTAAACCAGCGGAAACGATGGCTACATTAGCTAAAAAGGGTAGTTTAATC 15961 Query 9876 GGAGTTACGGGTCGTATTCAGACACGTAACTACGAAAACCAACAAGGACAACGTGTCTAT 9935 || || || || ||||| || || | || || ||||| |||||||| |||||||| Sbjct 15960 GGCGTCGTCGGACGGATTCAAACGCGGACTTATGACAACCAGCAAGGACAGCGTGTCTAC 15901 Query 9936 GTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGT 9977 || || |||||||| || |||||||||||| | || |||||| Sbjct 15900 GTGACTGAAGTTGTGGCCGATAATTTCCAACTATTAGAAAGT 15859 >seq2203 Length=131112 Score = 123 bits (136), Expect = 7e-24 Identities = 242/350 (69%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 17504 AATCACCTTGTGACTGCTTATAATCAAGAACAAGCTTATCGTTTGTTTATCGACGGCGAT 17563 ||||| |||||| ||||||||| ||||||||||| || | ||||||| || | || Sbjct 1504 AATCATCTTGTGCTTGCTTATAACCAAGAACAAGCCTACAGAATGTTTATGGATTGTGAA 1563 Query 17564 GG-TACGGGTTTGATGCATATATTTGACGGTAACTGC-GAAATAAAACACGACGAGCGTG 17621 || | ||| | || ||||| |||| | | ||| ||||| |||||| |||| || Sbjct 1564 GGATTCGGACTGGAA-CATATCTTTGCCAGCTG-TGCTGAAATTCGACACGATGAGCATG 1621 Query 17622 GAGATCACTTGTTAATCACGACACCAAAAGGCAATAAGCGCGTTTATTATAAAGGCGGCG 17681 ||||||| || | |||| |||| | || | ||||| | |||||||||||||||| Sbjct 1622 GAGATCATTTATGGATCAATCTACCAGAGGGAGAAAAGCGGATCTATTATAAAGGCGGCG 1681 Query 17682 GTAAAGTTAACAGTGTTGGTGCTATTACAGGTATGTCTTTAGGATCAGT-AGTATTCTGC 17740 | ||||| || ||| ||||| || || |||||||| || ||| | || | | || || Sbjct 1682 GAAAAGTAAATGCTGTCGGTGCCATCACTGGTATGTCATTTGGAACTGTCACTTTTTTG- 1740 Query 17741 GAGATTAACTTACTGCACATGGATTTTATCCAGGAGTGTTTTAGGCGTACTTGGGCGGCT 17800 || | || | || ||| | |||| | ||| |||| | || ||| || || Sbjct 1741 GAATTCAATCTGCTTAACAAAGCAGTTATAGATGAGGCTTTTCGTCGGACTAAAGCTTCT 1800 Query 17801 AAGCTACGTTATCATCTAGCAGATTTAAATCCCCCAGCACCTCAACATCC 17850 | | ||||||||||| || || ||||| |||||||| | ||||| Sbjct 1801 AGTTTTCGTTATCATCTCGCTGAACAGAATCCGCCAGCACCAAATCATCC 1850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137555609086944