Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11297 560 1e-154 seq29470 89.7 6e-13 seq95541 82.4 1e-10 >seq11297 Length=12984 Score = 560 bits (620), Expect = 1e-154 Identities = 1118/1631 (69%), Gaps = 59/1631 (4%) Strand=Plus/Minus Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 12755 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 12696 Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145 |||||||||| ||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 12695 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 12636 Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205 ||| | || | || | ||| || || | ||||||||||||||| || || ||||| | Sbjct 12635 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGATCTATAAAAGCTCCTC 12576 Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 12575 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 12516 Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 12515 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 12457 Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 ||| || || || |||| ||| || | | || ||| | | || ||||| || Sbjct 12456 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 12397 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 12396 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 12337 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 12336 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 12277 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 12276 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 12219 Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 |||| || | || | | ||| ||| || || ||||| | || Sbjct 12218 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 12166 Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671 || | || ||| ||||||| || | ||||| || ||||||| || |||||| || Sbjct 12165 GCTGGACTC-CCTTGATATGTACTGTACGCACCTTCTTTTTCAGCTAATTCACAACTAGC 12107 Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731 ||||||||||| |||||||| |||||||| || | | ||| ||| | ||||| | Sbjct 12106 TTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 12047 Query 62732 GCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62790 || || | | ||| | | | | | |||||| || || | || ||||||||||||| Sbjct 12046 ACTTTCGTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATAC 11988 Query 62791 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62850 | ||||||||||||||| |||| || ||| ||||| || | ||||||| |||||| || Sbjct 11987 CAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACAT 11928 Query 62851 CTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | |||| ||| || | |||| | ||||| ||||| | || || | ||| || Sbjct 11927 CAATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAA 11871 Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 ||| ||||| || | ||||||||||| | ||| | || || || || ||||| | Sbjct 11870 AATTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 11811 Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || |||| | || | | ||||| | | ||||||||||||||| ||||| || | Sbjct 11810 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 11754 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 |||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| ||| Sbjct 11753 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATG 11694 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 | |||||||| || | || | ||||||||| | ||||| | || |||| | | | Sbjct 11693 GTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT 11634 Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 | ||| || || ||| |||| || ||| | ||| | | ||| || || ||||| Sbjct 11633 --GTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCC 11576 Query 63203 CCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 || || | | | | |||||| |||| |||||||| | ||| || |||| Sbjct 11575 A-AAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCAT 11520 Query 63262 CCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 |||| |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | Sbjct 11519 CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAG 11460 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| ||| || || ||||| ||||| || | ||| | ||| | | ||||| | || Sbjct 11459 CTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCAT 11400 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| || || || || || || | | || || ||||||||||| || ||||||| | Sbjct 11399 GCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACAT 11340 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 |||| ||||| || ||||| |||||||||||||| | | ||| ||||| | ||||| | Sbjct 11339 ATCTGGCGGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAG 11280 Query 63499 TACCGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCC 63554 | || | || || || ||| || | || || || || || |||||| || Sbjct 11279 TGCCAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCA 11224 Query 63555 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTA 63614 || || |||||| |||||||| ||| ||||||| || ||| | || ||||| |||||| Sbjct 11223 CCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTA 11164 Query 63615 TCATCGATCAT 63625 ||||| |||| Sbjct 11163 TCATCTTTCAT 11153 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 9881 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 9822 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||||||||| || || ||| | || | || | ||| Sbjct 9821 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 9762 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 9761 GTTACACCAGAATATATGCC 9742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| |||||||| || ||| ||||||||||||| |||||||||||||||||| Sbjct 10639 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 10580 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 10579 TTAAAATCTCTATCATAAACAAT 10557 >seq29470 Length=9567 Score = 89.7 bits (98), Expect = 6e-13 Identities = 245/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 3654 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 3711 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 3712 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3771 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | ||||||||| | |||| Sbjct 3772 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3831 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 155488 ||||| | || | ||||| || |||| ||||||||| ||| | | | || | Sbjct 3832 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACT-TGA 3890 Query 155489 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAA 155545 | |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 3891 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 3950 Query 155546 GTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTG 155605 |||||||| |||||| | ||||| |||| | || | | || || | | |||| Sbjct 3951 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 4010 Query 155606 ACTGTTTATA 155615 | || ||||| Sbjct 4011 ATTGCTTATA 4020 >seq95541 Length=3042 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 2738 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 2797 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || || |||||||||||||||| || || || Sbjct 2798 CATATATCTGGATATTGGATTGGGAATATTACGAA 2832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628557303491520