Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16]
160,084 sequences; 259,837,422 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq11297 560 1e-154
seq29470 89.7 6e-13
seq95541 82.4 1e-10
>seq11297
Length=12984
Score = 560 bits (620), Expect = 1e-154
Identities = 1118/1631 (69%), Gaps = 59/1631 (4%)
Strand=Plus/Minus
Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085
|||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| |
Sbjct 12755 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 12696
Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145
|||||||||| ||||||| || | |||| ||| ||||| || ||| |||||
Sbjct 12695 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 12636
Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205
||| | || | || | ||| || || | ||||||||||||||| || || ||||| |
Sbjct 12635 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGATCTATAAAAGCTCCTC 12576
Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264
| || || ||||| | |||| || || ||| ||| ||||| | ||||| || || |
Sbjct 12575 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 12516
Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321
| |||| | |||| |||| ||| | |||| | || |||||| | |||||
Sbjct 12515 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 12457
Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381
||| || || || |||| ||| || | | || ||| | | || ||||| ||
Sbjct 12456 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 12397
Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441
|| ||||| | ||||||||||| || ||||| | ||||||||| ||| | |||
Sbjct 12396 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 12337
Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501
|| | || ||| | || || | |||||| ||||| || |||||||||||||| || | |
Sbjct 12336 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 12277
Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559
|||| | ||| | | ||| ||||| || || || ||||| || |||| | ||
Sbjct 12276 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 12219
Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612
|||| || | || | | ||| ||| || || ||||| | ||
Sbjct 12218 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 12166
Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671
|| | || ||| ||||||| || | ||||| || ||||||| || |||||| ||
Sbjct 12165 GCTGGACTC-CCTTGATATGTACTGTACGCACCTTCTTTTTCAGCTAATTCACAACTAGC 12107
Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731
||||||||||| |||||||| |||||||| || | | ||| ||| | ||||| |
Sbjct 12106 TTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 12047
Query 62732 GCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62790
|| || | | ||| | | | | | |||||| || || | || |||||||||||||
Sbjct 12046 ACTTTCGTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATAC 11988
Query 62791 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62850
| ||||||||||||||| |||| || ||| ||||| || | ||||||| |||||| ||
Sbjct 11987 CAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACAT 11928
Query 62851 CTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907
| |||| ||| || | |||| | ||||| ||||| | || || | ||| ||
Sbjct 11927 CAATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAA 11871
Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967
||| ||||| || | ||||||||||| | ||| | || || || || ||||| |
Sbjct 11870 AATTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 11811
Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024
| || |||| | || | | ||||| | | ||||||||||||||| ||||| || |
Sbjct 11810 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 11754
Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084
|||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||
Sbjct 11753 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATG 11694
Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144
| |||||||| || | || | ||||||||| | ||||| | || |||| | | |
Sbjct 11693 GTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT 11634
Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202
| ||| || || ||| |||| || ||| | ||| | | ||| || || |||||
Sbjct 11633 --GTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCC 11576
Query 63203 CCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261
|| || | | | | |||||| |||| |||||||| | ||| || ||||
Sbjct 11575 A-AAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCAT 11520
Query 63262 CCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318
|||| |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| |
Sbjct 11519 CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAG 11460
Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378
||| ||| || || ||||| ||||| || | ||| | ||| | | ||||| | ||
Sbjct 11459 CTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCAT 11400
Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438
|||| || || || || || || | | || || ||||||||||| || ||||||| |
Sbjct 11399 GCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACAT 11340
Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498
|||| ||||| || ||||| |||||||||||||| | | ||| ||||| | ||||| |
Sbjct 11339 ATCTGGCGGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAG 11280
Query 63499 TACCGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCC 63554
| || | || || || ||| || | || || || || || |||||| ||
Sbjct 11279 TGCCAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCA 11224
Query 63555 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTA 63614
|| || |||||| |||||||| ||| ||||||| || ||| | || ||||| ||||||
Sbjct 11223 CCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTA 11164
Query 63615 TCATCGATCAT 63625
||||| ||||
Sbjct 11163 TCATCTTTCAT 11153
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076
|| || || || || |||| ||| ||||| ||||||||||| || | ||||||||||||
Sbjct 9881 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 9822
Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136
||||| | ||| || ||| ||||||||||| || || ||| | || | || | |||
Sbjct 9821 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 9762
Query 64137 GTTACTCCATTATATATTCC 64156
||||| ||| |||||| ||
Sbjct 9761 GTTACACCAGAATATATGCC 9742
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866
|| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||||
Sbjct 10639 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 10580
Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889
||| |||| || |||| |||
Sbjct 10579 TTAAAATCTCTATCATAAACAAT 10557
>seq29470
Length=9567
Score = 89.7 bits (98), Expect = 6e-13
Identities = 245/370 (66%), Gaps = 9/370 (2%)
Strand=Plus/Plus
Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309
||||||||||| |||| || |||||||| ||| | || | || || | | ||| |
Sbjct 3654 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 3711
Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369
||||||| |||| || |||||| | || | ||||| ||||| ||| | || |||||
Sbjct 3712 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3771
Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429
|||||||| || ||||| || ||| | | | ||||||||| | ||||
Sbjct 3772 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3831
Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 155488
||||| | || | ||||| || |||| ||||||||| ||| | | | || |
Sbjct 3832 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACT-TGA 3890
Query 155489 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAA 155545
| |||||| ||||| | || | || || | ||| || ||| | || || || |
Sbjct 3891 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 3950
Query 155546 GTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTG 155605
|||||||| |||||| | ||||| |||| | || | | || || | | ||||
Sbjct 3951 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 4010
Query 155606 ACTGTTTATA 155615
| || |||||
Sbjct 4011 ATTGCTTATA 4020
>seq95541
Length=3042
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
|| |||| || |||||||| | |||||||| ||||| || || ||||||||||| | |
Sbjct 2738 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 2797
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
|| || || |||||||||||||||| || || ||
Sbjct 2798 CATATATCTGGATATTGGATTGGGAATATTACGAA 2832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628557303491520
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