Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11297 536 1e-147 seq95541 136 4e-27 >seq11297 Length=12984 Score = 536 bits (594), Expect = 1e-147 Identities = 1188/1762 (67%), Gaps = 31/1762 (2%) Strand=Plus/Minus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 12726 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAATCCCATTTTC 12667 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || |||||| | || |||| ||| | | || ||| | Sbjct 12666 CAAGCGTGGAAATGAATCGACGTAAGTTTTCCATAGTTAGGTTTAGCAACATGTATGTTA 12607 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | |||||||||||||||||||| || ||||| || |||||||| | || | || || Sbjct 12606 AAAGATTGACTTTGATCTATAAAAGCTCCTCTATCAGCTGCCATCTGTA---TGGATGTT 12550 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-- 37039 | | || |||||||| || ||||| || | | | |||| || | | | || | | Sbjct 12549 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTTTAGGAATTTTTTC 12491 Query 37040 AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACAT 37097 ||| | || ||||| ||||| | | | ||| ||| || || || | || ||||| Sbjct 12490 AATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTTCATATCTTCATCCCACAA 12431 Query 37098 ATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157 || | | | || ||| || || | || || || |||| ||||||||||| Sbjct 12430 ATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAA 12371 Query 37158 TACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAAT 37215 ||||||||| ||| |||| ||| | ||| | ||||||| || ||| | || | | Sbjct 12370 GACTCTTCTTTGGTAAATAT-TTGAT-GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGA 12313 Query 37216 ATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGT 37275 ||||| | ||||| ||||| ||||| || ||||| | || ||| | ||| |||||| Sbjct 12312 ATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGT 12253 Query 37276 GTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCAC 37335 | || | | ||| || || ||| ||||| | ||||| || | || |||| Sbjct 12252 TTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCAC 12193 Query 37336 ATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCG 37395 |||||||| || || ||||||| || |||||| | | |||||| || | || Sbjct 12192 ATATCATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTACTGTACGCACCT 12133 Query 37396 TAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATT 37455 | ||| ||||| ||| ||||||| ||||| ||| ||||||| |||||||| || ||| Sbjct 12132 TCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATT 12073 Query 37456 TGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT-AATATAAACAC 37514 ||| ||| | | | |||||| || || ||| | | ||| | || || | |||| | Sbjct 12072 TGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAAG-ATATTCTCATCAACACAAACGC 12014 Query 37515 ATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGA 37574 ||| |||| ||||||||||| ||||| || ||||||||| || |||| || | | Sbjct 12013 ATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGC 11954 Query 37575 TTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTT 37634 ||| || |||||| |||| | ||| || | ||| |||| ||||| | || || || Sbjct 11953 TTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTT 11894 Query 37635 CGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGA 37694 || ||| | | || || | || ||||| |||||| | |||||| | | | | Sbjct 11893 TGTGATTTCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCAACAAACATGTTAAGTGC 11834 Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 || || | || || || || || ||||||||||| | | |||| | || ||| || Sbjct 11833 TATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGT 11774 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 || ||||| || || |||| || || | ||| ||||||| ||| | ||||||| Sbjct 11773 GCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGC 11714 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||| ||||| | || || || || || || | ||| || || ||||| || ||||| Sbjct 11713 ATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCA 11654 Query 37875 TAAACTTCTT--GCTTTAACGATCGCTTT---AAt-ttttttCTTTGTTTCGTATTCTAT 37928 ||| |||| ||| | || | | ||| ||| |||||||| ||| |||| Sbjct 11653 TAA--CTCTTGAGCTCTGAC--TTGTTTTATAAATCGTTTTTCTT--CTTCATATTTGGC 11600 Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGAC 37987 |||| | || || |||| || || | || || | || ||||| || |||| Sbjct 11599 ATAT-AGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAATCATGAGGAC 11541 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 |||| ||| ||| ||||||| |||||||| | || |||||| | ||| |||| ||||| Sbjct 11540 ACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATA 11481 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 | ||| ||| | ||| | | ||| |||||| || ||| ||||| |||| | Sbjct 11480 AAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCA 11421 Query 38108 GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTT 38167 || || |||||||| || ||||| || |||| |||||| | | ||| || || | || Sbjct 11420 AGAATTCAAATATATCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTT 11361 Query 38168 TATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTA 38227 | | || || |||| | |||||| | || || ||||| | ||| ||||| || |||| Sbjct 11360 TGTTTCCACCTTGATCTACATATCTGGCGGTATTGTTATACACTCTCAACATTGGCACTA 11301 Query 38228 TACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA 38287 |||||| || || || | || | ||| |||| ||||| ||||| || | | Sbjct 11300 GACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATGTG 11241 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAA 38347 | || ||||| ||||| ||| ||| || ||||| || ||||||||||| ||||||| Sbjct 11240 TATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAA 11181 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| || || ||||| || || | || | ||||| || | || ||| Sbjct 11180 AAATACCTTCAATGCTATCATCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCC 11121 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 || || | ||| || | |||||| ||||||| | || |||| || |||| Sbjct 11120 GCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCA 11061 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 |||||| || | ||| || ||| || || | || ||||| |||| || || |||| Sbjct 11060 TATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCA 11001 Query 38528 TTAGCATATGTTGTGGTCTTTC 38549 | ||||| ||||| || ||||| Sbjct 11000 TAAGCATGTGTTGAGGCCTTTC 10979 >seq95541 Length=3042 Score = 136 bits (150), Expect = 4e-27 Identities = 170/229 (74%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 2365 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 2424 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || | || | | Sbjct 2425 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAGAAACGCT 2483 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || | || |||||||| |||||||||||| || |||||| ||||||| | ||| || | Sbjct 2484 CCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGA 2543 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 |||| | ||| || |||| ||||| | |||||||| |||| || Sbjct 2544 TAAAATGTTTCTCACAATCTT---TTAATGTCTCCCAATCTGCTAAGTC 2589 Score = 109 bits (120), Expect = 5e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || || ||||||||||||| ||||||||||| | ||||||||| Sbjct 1459 ATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATT 1518 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || |||||||| || | || | |||| Sbjct 1519 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAGCAATTATACGTTCT 1578 Query 11786 CCATAT---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| || || | ||||| ||||| | | ||||| || || ||||| || || Sbjct 1579 CCAAATGTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACA 1638 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| | ||||| || || || ||||| Sbjct 1639 CATGGTAGAGTTTCAATTGCATTGAATAA 1667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467587258448960