Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq20 214 1e-50 seq1641 93.3 3e-14 seq16183 89.7 4e-13 seq32113 86.0 5e-12 >seq20 Length=148542 Score = 214 bits (236), Expect = 1e-50 Identities = 422/621 (68%), Gaps = 5/621 (1%) Strand=Plus/Minus Query 96677 AACAAATTTACTGACAACATAAACTATTTGATTTTGCCCAATTTTACATTGTGGGATCAC 96736 ||||| || || |||| ||| |||||||||| ||||| | |||| ||||||||| ||| Sbjct 87117 AACAAGTTCACCGACACCATTGACTATTTGATCTTGCCACACTTTATATTGTGGGACCAC 87058 Query 96737 AATTTTTTGGTGTTTCTCAATAAAAAATTTAACAGTAAAAAAGTGGGCGGTTTGGTAAAC 96796 |||||| | | |||||||| ||| || ||| ||| | | | | ||||| || Sbjct 87057 AATTTTGTCATTTTTCTCAACAAAGCGTTCAACTCCAAACACGACAACAGCTTGGTGGAC 86998 Query 96797 GTTTGGGGTGCGATGCAAAAAATATCTCTGTCTCAGGGTGTCATCAAGGATTTGATTCAA 96856 ||| | | || |||||||||| || | || || ||||||| || | || Sbjct 86997 ATTTCGAGCGCCCTGCAAAAAATTAAACTCACACACGGCATCATCAAAGACCAATTGCAG 86938 Query 96857 AACAAAAACGGTTACGCGGGCCAATATTTGTATTCGACCTTTTTGAATACCAGTAGTTTT 96916 | ||||||||||||||| | ||||||||||||||||| ||| | || ||| || Sbjct 86937 AGCAAAAACGGTTACGCCGTTCAATATTTGTATTCGACGTTTCTCAACACCGCCTCCTTC 86878 Query 96917 TACGCAAACGTGCTTTGTTTGAACGGTGCGAACGAAATTGTGCCACCTCAAATGAGCATA 96976 || || ||||||| ||||||||||| | |||||||| || || || | ||| | Sbjct 86877 TATGCCAACGTGCAGTGTTTGAACGGCGTCAACGAAATCGTTCCGCCGCGCGCCAGCGTC 86818 Query 96977 GACAGATATTACGGTAGACGTGTAGATAATGTGCGCGTTTGGAATACTCGTCACCCTAAC 97036 || | || ||||| | || || | || ||||||| |||| || || ||||| ||| Sbjct 86817 AACCGCTACTACGGCCGGCGGGTGGGCAACGTGCGCGCCTGGACCACGCGACACCCCAAC 86758 Query 97037 ATTTCTCAGCTTTCGACTCAATTTTCACGCGTGATACAAAGCGACTCGCACA---ATTGG 97093 || ||||| || || | || |||| | | |||||| ||| ||||| Sbjct 86757 ATCAGCCAGCTGAGCACGCAGGTGTCGGACGTGCGCCTCAACGACTCCAACACCGATTGG 86698 Query 97094 AACGTTAAAGTCGGTCTGGGCACTTTTGTTGGTGCAAATCGCGATTGCGACGGCGATAAA 97153 ||||| ||||| || |||||| ||| || || || ||||||||| ||||| ||| Sbjct 86697 AACGTCAAAGTGGGCTTGGGCATATTTCCGGGCGCCAACACCGATTGCGATGGCGACAAA 86638 Query 97154 GAAGTGATAACGTTTTTGCCTTTGCCCAATTCTCTTATCGAGTTGGAGTCTCTGCTGTAC 97213 || | || || ||| |||| ||||| ||| ||||| |||||| | | ||||| Sbjct 86637 AAAATCATCACCTTTCTGCCGCAACCCAACAGTCTCATCGACCTGGAGTGTTTATTGTAC 86578 Query 97214 AACGATCCTAAGTATTCATTT-TTGTCGTTTGATAAAAATCGGCTATCTTTTGTGTCCCA 97272 ||| || || || |||| | | || || || ||||| || || |||||||| Sbjct 86577 GGCGACCCGCGGT-TTAATTTCATATGCTTCGACAAGAATCGACTCAGCTTCGTGTCCCA 86519 Query 97273 ACAGGTGTACTATTTGTACAA 97293 ||| | |||||| ||| ||| Sbjct 86518 ACAAATTTACTATCTGTTCAA 86498 Score = 127 bits (140), Expect = 2e-24 Identities = 352/536 (66%), Gaps = 8/536 (1%) Strand=Plus/Plus Query 217 ACTCTGTTCAAAGAGATTAGACGAGTTCATCCAGACACAATGAAACTTGTGTGTAACTGG 276 ||| |||||||||||||| | || | || ||||| ||||| || ||| |||||| Sbjct 136713 ACTTTGTTCAAAGAGATTCGCAATGTGAAGCCGGACACGATGAAGCTGGTGCTCAACTGG 136772 Query 277 AGCGGAAAAGAATTCCTTCGTGAGACCTGGACTCGCTTTATCTCTGAAGAATTCCCCATC 336 ||||| ||||| || | ||||| || ||||| || || || || || ||||| Sbjct 136773 AGCGGCAAAGAGTTTTTGCGTGAAACTTGGACCCGTTTCGTCGAGGACAGTTTTCCCATT 136832 Query 337 ACCACCGATCAAGAAATTATGGATCTGTGGTTCGAACTCCAGGTACGTCCCATGCATCCT 396 || ||| || || | ||||| ||| ||| || | | | |||| | || Sbjct 136833 GTCAACGACCAGGAGGTGATGGACGTGTTTCTCGTGATCAACCTGAGACCCACTCGGCCC 136892 Query 397 AACCGTTGCTACAAATTCACTATG---CAATACGCTCTCGGCGCCCACCCCGATTACGTG 453 |||||||| ||||| || | || ||| |||| ||| | || |||| |||||| Sbjct 136893 AACCGTTGTTACAAGTT---TTTGGCTCAACACGCGCTCCGTTGGGACGCCGAGTACGTG 136949 Query 454 GCTCATGATGTGATTCGTCAGCAA-GATCCCTACTACATTGGTCCCAACAATGTCGAGCG 512 | || || |||||||| || | || ||| ||| | || | ||||||| | | Sbjct 136950 CCGCACGAAGTGATTCG-CATCGTCGAACCCATGTACGTGGGCCAGAACAATGAGTACAG 137008 Query 513 CATCTGTCTATCCAAACAGGGTGTTGCTTTCCCGCTCACTTGCCTTCAATCCGTGTACAA 572 ||| || | | |||| || | | || ||| ||| | | || || ||||| Sbjct 137009 AATCAGTTTGGCGAAACGCGGCGGCGGTTGCCCCATCATGAACATACACAGCGAGTACAC 137068 Query 573 TGACAACTTTGAAACGTTCTTTGACGACGTCCTGTGGCCATACTTCTACCGTCCTCTGGT 632 || |||||| ||||| | || |||| | ||| |||| ||| || | || Sbjct 137069 CAACTCGTTTGAATCGTTCGTCAACCGCGTCATCTGGGAGAACTTTTACAAGCCCATCGT 137128 Query 633 CTACGTGGGCACCACATCGTCCGAAATCGAAGAAATCATGATCGAGGTTTCGCTGTTGTT 692 ||| | |||||| || ||||| || ||||| | ||||| || ||||| |||| Sbjct 137129 GTACATTGGCACCGACTCTGCCGAAGAGGAGGAAATTCTCATCGAAGTGTCGCTCGTGTT 137188 Query 693 CAAAATCAAGGAATTCGCGCCCGACGTGCCTCTGTTCACCGGACCCGCTTATTAAA 748 |||| | || || || || || |||| ||||||||||||||| ||||| ||||||| Sbjct 137189 CAAAGTTAAAGAGTTTGCACCTGACGCGCCTCTGTTCACCGGTCCCGCATATTAAA 137244 Score = 100 bits (110), Expect = 2e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 52375 TGTGGGAACGTAGCTACGAGGACAATTACACGTTGGGTCAACAATTGAGTATACGTATGA 52434 ||||||| || |||||||||||||||||||| | || ||||| ||||| || || || | Sbjct 101857 TGTGGGAGCGAGGCTACGAGGACAATTACACGCTCGGCCAACAGTTGAGCATTCGCATCA 101916 Query 52435 CTACAAATTTGATACAGAGTGGATTAGATTTTAAACATCA 52474 | || || |||||||||| || || |||||||||||||| Sbjct 101917 CCACCAAACTGATACAGAGCGGGTTGGATTTTAAACATCA 101956 Score = 95.1 bits (104), Expect = 9e-15 Identities = 250/384 (65%), Gaps = 21/384 (5%) Strand=Plus/Minus Query 109451 CAATGCAACCCTTCAGCCAATCTGTTGCCCATGAAGCTTTGGTTTATACTCCATTGATCC 109510 || ||||| | ||| |||| | ||||||| || || || | |||| || || Sbjct 99205 CATTGCAAACTTTCCGCCATGCGATTGCCCACAAACGACTGATTCTTGGTCCACTGGTCG 99146 Query 109511 AAACGAGTACCCTCCACTTTTTCGTATCCGGTAATATTTTTACCTATAAATTCTTTGTAG 109570 ||||| || |||||||||||||||| || || || | || || |||||| | Sbjct 99145 AAACGCGTGCCCTCCACTTTTTCGTGGCCCGTGTGGTTGCTCTTGATGAACTCTTTGAAT 99086 Query 109571 ATATTGTCTGGAGTGTTGTTGAAAAACATGTACGGTATTAATATTAGAGGATATCTTTTA 109630 || ||||| ||||||||||| || |||||||||||||| | || ||||| | Sbjct 99085 ATGTTGTCGGGAGTGTTGTTAAACAACATGTACGGTATGTTAAATATGGGATAGCGCGGC 99026 Query 109631 CCGTT-TTTTGTGCAAGTTTT--------CACCA------------CCATCCCATCAAAA 109669 |||| | |||| ||| ||||| | || | ||||| Sbjct 99025 GCGTTCGGGTCGGCAAAATTTCCACCGCGCACCACGTACTTGCGCTCAATGTCGTCAAAG 98966 Query 109670 TTTGTTTGGCGCGACAAATATGATATTGGTGAGAGACAAATTTGGGCATGCACTCCGTCT 109729 || | |||||||||| | | || | || || || || ||||| || ||| |||||| Sbjct 98965 TTGGACTGGCGCGACAGAAACGAGACGGGCGACAGGCAGATTTGTGCGTGCGTGCCGTCT 98906 Query 109730 TTGGTTACGTATTCACTCAAATCTTCGGCGCTGTTCAACACCCCCTTTTGTCCGTGCACA 109789 | | | | || ||| ||||||| |||| |||||||||||||| ||||| | Sbjct 98905 TCCGCCATCCACTCGGTCAGATCTTCGCTCTTGTTGAACACCCCCTTTTGGCCGTGGATG 98846 Query 109790 CCGCAAATTTTCAATCCCTCCAAA 109813 ||||||||||| | ||||| ||| Sbjct 98845 CCGCAAATTTTGACGCCCTCTAAA 98822 >seq1641 Length=3631 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 42875 AATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGT 42934 ||| || ||||| || |||| | ||| | ||| | ||| |||||||| | |||| Sbjct 2392 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 2333 Query 42935 AATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994 | || |||||||||||| | || || | |||||| || ||||| ||||| || || || | Sbjct 2332 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 2273 Query 42995 CGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG 43054 | | || | |||||| || || ||| |||| || | | | || || | Sbjct 2272 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 2213 Query 43055 CCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||||| || | || || ||||| || || || || || || |||||||||||| Sbjct 2212 CCTCGACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 2157 >seq16183 Length=3749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || |||| |||||| || || ||||||| || |||||||| | || Sbjct 1 AATGTGCGCCCATCTTCCAGTTGTTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGGGGA 60 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || |||| || | || || | | | |||||| ||| || || Sbjct 61 ATGCCTTCTTTGTC-CTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 119 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || |||||||| || || || |||||||||||||||||||| Sbjct 120 TTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 167 >seq32113 Length=13445 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| || ||||| | ||| || || || Sbjct 7564 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 7623 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||||||| || || || |||||||| || |||||||| | || Sbjct 7624 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7683 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || |||| || | ||| || ||| || || || Sbjct 7684 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 7743 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || || ||||||||||| || |||||||| Sbjct 7744 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380625538852872