Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11297 558 5e-154 seq95541 95.1 2e-14 seq29470 84.2 3e-11 >seq11297 Length=12984 Score = 558 bits (618), Expect = 5e-154 Identities = 1102/1615 (68%), Gaps = 27/1615 (2%) Strand=Plus/Minus Query 70781 TTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGAT 70840 ||||||| | ||||| | ||||||||||| | | | ||| | ||| || |||| | Sbjct 12755 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 12696 Query 70841 AGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 70900 ||||||| |||||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 12695 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 12636 Query 70901 AATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCC 70960 |||| |||| | || | || || || | || ||||||||||| || || ||||| | Sbjct 12635 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGATCTATAAAAGCTCCTC 12576 Query 70961 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 71019 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 12575 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 12516 Query 71020 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCA-ATAAT 71075 | |||| | |||| |||| ||| | |||| | || |||||| | || | ||||| Sbjct 12515 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGT-TGTATATAAT 12458 Query 71076 CCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 71135 |||||| || ||||||| ||| || | | || ||| | | || |||||| | Sbjct 12457 AAGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 12398 Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | || Sbjct 12397 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 12338 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | || ||| | || || | |||||| ||||| || |||||||||||||| || | Sbjct 12337 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 12278 Query 71256 CAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 ||||||| ||| | | ||||||| | || || ||||| || |||| | ||| Sbjct 12277 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 12218 Query 71316 AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 ||| || | || || || | || || Sbjct 12217 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGACT 12158 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| ||||||| ||| | ||||||||||| |||| ||||||||| || |||||||| Sbjct 12157 CCCTTGATATGTACTGTACGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGC 12098 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 ||||||||||| ||||| || || | | ||||||| | ||||| | || || | Sbjct 12097 ACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTA 12038 Query 71496 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | ||| | | | | | |||||| ||||| | || ||||| |||||||| ||||||| Sbjct 12037 AG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTC 11979 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 | |||||| |||| ||| ||| ||||| || | ||||||| |||||| ||| |||| || Sbjct 11978 TATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTT 11919 Query 71615 TATTGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672 | || | |||| ||| | | ||||| | || |||| ||| ||||| |||||| Sbjct 11918 TGTTTAAATTT-TGAGTTACAATCTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATCT 11861 Query 71673 CCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 || | ||||||| ||| | || | || || || || || || || || |||| Sbjct 11860 GTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT- 11802 Query 71733 AGCATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 | || | | ||||| | || |||||||||||||| ||||| || || || || | Sbjct 11801 --CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAG 11744 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||||| ||||||||||||| ||||||| ||||||||||| | || | || |||||||| Sbjct 11743 ATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGT 11684 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 || | || | ||||||||| | ||||| | || |||| | | | || | | Sbjct 11683 CTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAAA 11624 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT- 71968 || |||||| ||| |||| | ||||| | ||| || || ||||| ||||| | Sbjct 11623 TCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCAGTCAG 11565 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | | |||||||| |||| |||||||| | ||| || |||| | | ||||| || Sbjct 11564 CGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTT 11505 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || || | Sbjct 11504 TCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCT 11445 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | ||||| ||||| || | ||| | ||| | | ||||| | |||||| || || || | Sbjct 11444 TACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAAT 11385 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | || || | | || || ||||||||||| || ||||||| ||||| ||||| || | Sbjct 11384 AAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCGGTATTGT 11325 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 |||| |||||||||||||| | | |||||| || | ||||| || || | || || Sbjct 11324 TATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAG 11265 Query 72269 TTCCACTG-GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 || ||| || | || | || || || |||||| || || || |||||| | Sbjct 11264 AACC-CTGAGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCAGCAGATTTAGAAA 11208 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||||| ||| ||||||| |||||| | || || || || |||||||| |||| Sbjct 11207 TTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCATCTTTCAT 11153 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 9881 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 9822 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | ||| || ||| ||||||||||| || || ||| | || | || | ||| Sbjct 9821 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 9762 Query 72892 GTTACTCCATTATATATTCC 72911 ||||| ||| |||||| || Sbjct 9761 GTTACACCAGAATATATGCC 9742 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 10640 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 10581 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| ||| | || | | ||| ||||| | ||| Sbjct 10580 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 10530 >seq95541 Length=3042 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| |||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 2738 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 2797 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || ||||| ||||||| |||||||| || || || Sbjct 2798 CATATATCTGGATATTGGATTGGGAATATTACGAA 2832 >seq29470 Length=9567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 221/332 (67%), Gaps = 9/332 (3%) Strand=Plus/Plus Query 165040 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTT 165097 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 3654 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 3711 Query 165098 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 165157 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 3712 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3771 Query 165158 TCATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 165217 |||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 3772 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3831 Query 165218 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 165276 ||||| | || | ||||| || |||| ||||||||| ||| | | | || | Sbjct 3832 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACT-TGA 3890 Query 165277 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAA 165333 | |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 3891 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 3950 Query 165334 GTTTAGGTATACACAAAAAGAAAGAATATAAA 165365 |||||||| |||||| | ||||| |||| Sbjct 3951 CATTAGGTATTCACAAACAATCAGAATTTAAA 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669796216903840